Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0257 ATGGAGACGCCGGAGGAAGGCGACGGGGGGTATGAAGTAGACATCAGCTTGAAAGATCAAATCAAATCTTCGTCTGGAAGCATATTCAATCTGATCAGGAACGAGTTAGGTCTTGAGTCAACTAGACGATTGTTTAGCCACGAAAACGTCATTAATGGCATTAAATCTGTATCCAGAGGTTTCGTCATCCATCCAGAAAACAGGTGGTACAAAGCGTGGACAAATTTCATACTGGTCTGGGCTCTGTACTCATCCTTCTTCACACCTTTGGAGTTTGGCTTCTTTAGGGGATTGCCAAAGCACCTCTTCATACTCGACATTGCAGGACAGATTGCTTTTCTACTTGACATCATCTTGCAGTTCTTTGTTGCCTACAGAGACAGTCAAACCTACCGTATGGTTTATAAGCGCACCTCTATTGCTCTCAGATACTTGAAATCCAGTTTTTTGGTTGATTTACTTGGCTGTATGCCTTGGGATATCATCTATAAGGATTCTGGAAAAAAAGAGGGATTGAGGTACCTTCTATGGATCAGATTGAGTAGGGTGCGTAAAGTGAACAATTTCTTTCATAAGCTGGAGAAAGACACACGAATCAATTACTTGTTTACTAGGATTGTAAAGCTTATTGCTGTTGAGATCTACTGTAGCCATACAGCCGCCTGTATTTTTTACTATCTGGCTACAACTCTGCCTGCATCCAAAGAGGGATACACATGGATTGGAAGTTTAAAATTGGGCGATCATGCTTACTCTAGTTTCAGAGAGATTGATATATGGAAACGCTACATAACGTCTTTATACTTTGCTGTTGTCACTATGGCCACTGTTGGGTATGGAGACATACATGCAGTCAATATAAGGGAGATGATCTTCATTATGATATATGTCTCCTTCGACATGATTATCGGTGCTTATTTGATTGGTAACATGACGGCATTGATTGTAAAAGGATCAAATACAGAAAAATTCAGGGACAAAATGACAGACCTCATCAAATATATGAACAGAAATCGACTTGGAAGTGACATCCGTAATCAGGTCAAAGGCCATGTACGTTTGCAGTATGAAAGTAGCTACACTGATCCTGCTGCTCTTCAAGACATTCCCATTTCTATTCGTGCCAAGATTTCAAGGACTTTGTACTTACCCTGTGTTGAGAACGCTGCGCTGTTTAAGGGATGCTCCTCTGAATTCATCAATCAGATAGTGAGTAAAGTCCATGAAGAGTTTTTTCTTCCTGGAGAAGTAATTATGGAGCAGGGAATTGTAGTGGATCAACTTTATTTTGTCTGTCATGGTGTCCTGGAGGAAGTGGGAATCGGAGAGGATGGACTAGAAGAGACTGTTTCGCTATTAGAACCCGAAAGCTCGTTTGGAGAGGTTTCTATACTTTGCAACATTCCTCAGCCTTATACAGTTCGAGTTTGTGAATTATGTCGGCTTCTACGGCTCGATAAACAGTCTTTCACATACATTCTCGAGATATTCTTCTCTGATGGTCGTAAAATTTTGAATAACCTTCTGGAGGGAAAAGAATCCGACGTTCGAATAAAGCAACTGGAATCAGATATCACATTTCATATCTCCAAGAAAGAAGCTGAACTTTCTTTGAAGCTAAATAGTGCAGCTTATGATGGAGACTTAAAACAGCTGAAAAATATAATCCGAGCCGGAGCTGATCCAAACAAGACAGACTATGATGGAAGGTCACCATTGCATCTTGCGGCATCAAGAGGAAATGAGGATATTACTTTTTTCCTCATCCAGGAAGGAGTAGACATCGATGTTAAAGATAATTTTGGAACAACGCCATTACTAGAAGCCATAAAAAACGGGCACGATCGAGTTGCCTCTTTGCTTGTAAACCAAGGCGCCACTTTGAAGATAGAAAATCCAGGTAGCTTTCTATGTACGGCAGTTGCAAAGGGCGATTCCGATTTCGTTAGAAAACTATTGTTAAATGGGATCGATCCAAACTCCAAAGATTACGATCACCGAACCCCGCTTCACATAGCCACGTCCGAAGGATTCTACATGATGGCTAAACTGCTATTAGAAGCTGGAGCCAGTGTTTTCTCAAAGGACAGAAGAGGAAACACCCCTCTTGATGAAACTCGAATGTCTGGAAACAAGAATCTGAGGAAGCTTGTAGAGAAGTGGAAGGTTTTTCAGTTATCAGAATTCCCCCACTGTCCCCAAGAAATACCTGATAGAAAACACTCAAGGAAATGCACAGTGTTTCCTTTCCACCCATGGGAAGCCAAAGAAGTAGAAGGTAGAAGAAGAACTGGGATTGTGATGTGGGTCCCACGTACAATTCAAGAGCTTATCAGACTTGCATCTGAGCAGCTTGAAACTTTAATGAGTGGTTCCTCTTGTGTATTATCAGAAGATGGAGGTAAAATTTGTGATGTAGAGTTGATCAGTGATGGCCAGAAACTGTATCTAAGTCAATCAAACACTGTAAATGAATGA 2478 41.16 METPEEGDGGYEVDISLKDQIKSSSGSIFNLIRNELGLESTRRLFSHENVINGIKSVSRGFVIHPENRWYKAWTNFILVWALYSSFFTPLEFGFFRGLPKHLFILDIAGQIAFLLDIILQFFVAYRDSQTYRMVYKRTSIALRYLKSSFLVDLLGCMPWDIIYKDSGKKEGLRYLLWIRLSRVRKVNNFFHKLEKDTRINYLFTRIVKLIAVEIYCSHTAACIFYYLATTLPASKEGYTWIGSLKLGDHAYSSFREIDIWKRYITSLYFAVVTMATVGYGDIHAVNIREMIFIMIYVSFDMIIGAYLIGNMTALIVKGSNTEKFRDKMTDLIKYMNRNRLGSDIRNQVKGHVRLQYESSYTDPAALQDIPISIRAKISRTLYLPCVENAALFKGCSSEFINQIVSKVHEEFFLPGEVIMEQGIVVDQLYFVCHGVLEEVGIGEDGLEETVSLLEPESSFGEVSILCNIPQPYTVRVCELCRLLRLDKQSFTYILEIFFSDGRKILNNLLEGKESDVRIKQLESDITFHISKKEAELSLKLNSAAYDGDLKQLKNIIRAGADPNKTDYDGRSPLHLAASRGNEDITFFLIQEGVDIDVKDNFGTTPLLEAIKNGHDRVASLLVNQGATLKIENPGSFLCTAVAKGDSDFVRKLLLNGIDPNSKDYDHRTPLHIATSEGFYMMAKLLLEAGASVFSKDRRGNTPLDETRMSGNKNLRKLVEKWKVFQLSEFPHCPQEIPDRKHSRKCTVFPFHPWEAKEVEGRRRTGIVMWVPRTIQELIRLASEQLETLMSGSSCVLSEDGGKICDVELISDGQKLYLSQSNTVNE 825
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1243119 1249686 - Conep11aG0026400.1 Cone11ag0257 447509
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0257 825 Gene3D - 514 633 IPR036770 -
Cone11ag0257 825 Gene3D - 72 317 - -
Cone11ag0257 825 PRINTS EAG/ELK/ERG potassium channel family signature 106 116 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone11ag0257 825 PRINTS EAG/ELK/ERG potassium channel family signature 215 225 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone11ag0257 825 PRINTS EAG/ELK/ERG potassium channel family signature 263 280 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone11ag0257 825 PRINTS EAG/ELK/ERG potassium channel family signature 307 316 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone11ag0257 825 SUPERFAMILY cAMP-binding domain-like 319 509 IPR018490 -
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat region circular profile. 665 697 - -
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 Pfam KHA, dimerisation domain of potassium ion channel 743 817 IPR021789 -
Cone11ag0257 825 SUPERFAMILY Voltage-gated potassium channels 65 316 - -
Cone11ag0257 825 ProSiteProfiles KHA domain profile. 744 825 IPR021789 -
Cone11ag0257 825 Pfam Ion transport protein 70 317 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag0257 825 FunFam Potassium channel KAT2 379 515 - -
Cone11ag0257 825 SMART cnmp_10 391 509 IPR000595 -
Cone11ag0257 825 SUPERFAMILY Ankyrin repeat 525 717 IPR036770 -
Cone11ag0257 825 CDD CAP_ED 391 505 IPR000595 -
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat region circular profile. 601 632 - -
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 PANTHER POTASSIUM CHANNEL AKT1 47 817 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cone11ag0257 825 SMART ANK_2a 568 597 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 SMART ANK_2a 665 694 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 SMART ANK_2a 535 564 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 SMART ANK_2a 632 661 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 SMART ANK_2a 601 630 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 FunFam Potassium channel SKOR 71 316 - -
Cone11ag0257 825 Gene3D Jelly Rolls 359 513 IPR014710 -
Cone11ag0257 825 Pfam Cyclic nucleotide-binding domain 411 495 IPR000595 -
Cone11ag0257 825 Gene3D - 634 725 IPR036770 -
Cone11ag0257 825 Pfam Ankyrin repeats (3 copies) 541 630 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 Pfam Ankyrin repeats (3 copies) 637 715 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 PRINTS Ankyrin repeat signature 569 584 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 PRINTS Ankyrin repeat signature 681 695 IPR002110 GO:0005515(InterPro)
Cone11ag0257 825 ProSiteProfiles cAMP/cGMP binding motif profile. 391 511 IPR000595 -
Cone11ag0257 825 ProSiteProfiles Ankyrin repeat region circular profile. 568 600 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0257 Cone-Chr11:1243119 Cone7ag0655 Cone-Chr7:3406157 1.14E-97 dispersed
Cone11ag0257 Cone-Chr11:1243119 Cone18ag1228 Cone-Chr18:8724053 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0257 K21867 - gmx:100797927 1252.65