Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0284 ATGGCGACGAGAACTGCTGCAAACCCTAGGTCGGGTGAAGTAGGGGCGCTAGGAACCATGGAAGAGGTTAAGAAGGTATTCAACAAGTTCGACAAGAACGGGGACGGAATGATCTCGAGCACGGAGCTTAAAGATGTGCTCTCTGAACTCGGCTCGAAGACAACGTCGGAGGAGGTTGATCACATAATGTCGGAGATGGATATGGACGGAGACGGATACATTAGTCTAGAGGAGTTCGCCGAGTTTCACTGTGGCGACGGAGGAGATCAGGACGGAAGCAAGGAACTCCGTGAGGCGTTCGATCTGTACGATATCGACAAGAACGGATTGATCTCAGCGAGCGAGTTGCAAACGGTGCTGAAGCGACTTGGAGAGAAGTGCAGTCTGAGTGACTGCTCGAGGATGATAAAGTCCGTCGACGTTGATGGAGACGGATGCGTGAATTTCGAGGAGTTCAAGAAGATGATGGGACGCTCTTGA 480 51.67 MATRTAANPRSGEVGALGTMEEVKKVFNKFDKNGDGMISSTELKDVLSELGSKTTSEEVDHIMSEMDMDGDGYISLEEFAEFHCGDGGDQDGSKELREAFDLYDIDKNGLISASELQTVLKRLGEKCSLSDCSRMIKSVDVDGDGCVNFEEFKKMMGRS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1380156 1382469 - Conep11aG0029100.1 Cone11ag0284 447536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0284 159 ProSiteProfiles EF-hand calcium-binding domain profile. 18 53 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 90 156 - -
Cone11ag0284 159 FunFam HLH domain-containing protein 15 84 - -
Cone11ag0284 159 SUPERFAMILY EF-hand 20 156 IPR011992 -
Cone11ag0284 159 Gene3D - 91 158 - -
Cone11ag0284 159 ProSitePatterns EF-hand calcium-binding domain. 104 116 IPR018247 -
Cone11ag0284 159 Gene3D - 16 86 - -
Cone11ag0284 159 CDD EFh 22 83 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSitePatterns EF-hand calcium-binding domain. 31 43 IPR018247 -
Cone11ag0284 159 FunFam Probable calcium-binding protein CML27 88 159 - -
Cone11ag0284 159 CDD EFh 95 156 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSiteProfiles EF-hand calcium-binding domain profile. 127 159 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSitePatterns EF-hand calcium-binding domain. 140 152 IPR018247 -
Cone11ag0284 159 Pfam EF-hand domain pair 94 156 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 Pfam EF-hand domain pair 21 82 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Cone11ag0284 159 SMART efh_1 58 86 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 SMART efh_1 131 159 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 SMART efh_1 22 50 IPR002048 GO:0005509(InterPro)
Cone11ag0284 159 SMART efh_1 95 123 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0284 K13448 - - gmx:100796491 206.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0284 Cone-Chr11:1380156 Cone1ag0757 Cone-Chr1:42487180 1.11E-36 dispersed
Cone11ag0284 Cone-Chr11:1380156 Cone15ag0581 Cone-Chr15:2949715 1.68E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009156 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 0 34