Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0305 ATGAATTCCTTTCACTCTTTTCCACCCTCTTCTTTCCTTCCTCTTCTCATCTTCTTCTTCACCAATCTTATCGTTTCCTCACACTTGTATTCAGATTGCACTTCCTCCTTCAACTGTGGCACCATCACCAATCTAACCTACCCTTTCTGGGGCCGAACCCGACCGGTTTCATGTGGGCATCCGGATTTAAAGCTCGAGTGCGAGCAAAACATGGCAACCATAGAAATCATGAAGGTCAAGTACCATATCCTAGAAGCCAAACCCAATTCCAAAATCCTCAAACTTTCTAGACAAGACTTCATTGATGGATCATTTTGTCGACCACAATTTATCAACACCACTCTTGATCCAACCCTTTTCGAATACGGTCCTCCGGGTTATGTGAATCTTACATTGCTATATGGGTGTGCACCGCTTTTTGTTTCTGTGCCGGGTCAATTCAGTTGCCCCGGATTCGGAATCGGGTATATGGAACTCGGGTTTTATGTTGGGCTCGGGACGTGTAATGTTAGTGTGGTAATCCCTGTTCTTGAGGAAGGGTTGCTGATGAAGCTTTGGGATTTGAGAAAAATGAATGAGGTTATTAAACAAGGATTTTATGTGAAGTTGAAAGTGGAGAGTGATTGTGAAGAGTGTTTGAAGTCAGGCGGGGTTTGTGGGTACGACCCGAAGTTAAATCAGCCGACTTGTTACTGCCGGGATTCGCCCCGTCGGTCAAAAACTTGCCCGACTTCAACATCAAGTGTTAATGGTGCTTCTCAAGTACCTAAAATTCCACCAGAGGCACAGAAGAAAAATCAGAAACCCCTTAAAATAGGACTGGCAATAGGAGCTGTATTCCTGCTGGCCATATTTGTAGCATGCTGGAGTTTTTACATTAAGCAACGCAAGAAATATGTGCTGCAATCTAAAGACCTCTCTACACCTCCTTCAAGCAAAGAGAATAATAACAATAACGTCTCTACTACCTTAATTACTACTAATCTCTCTCTGACTCGAAGCATCCCACCTTACCCCTCTTCCACATTAAGCCTCCAGAATCGTAGCAGTTATTTTGGAGCTCAAGTCTTTAGCTACATGGATCTCCAAAAAGCCACTGATAACTTCCATCCTTCTAGAGAATTAGGCAATGGAGGCTATGGCACGGTTTATTACGGTAAGCTTGATGATGGGAGGGAAGTTGCGGTGAAGTGTCTGTATGAAAACAACTTCAAACGGGTAGAGCAGTTCATGAATGAGGTAGAGATTCTGACCCGTTTACAAGACCGGAACCTTGTAAAACTCTATGGATGCACCTCAAGACATGGCCAAGAACTCCTCCTTGTATATGAATACATCCCTAATGGAACAGTAGCTGACCATATCCATGGAAATAAACGGACCAACCCAGGCCCACTCACTTGGCCTGTCCGGTTGAACATCGCTGTAGAAACGGCACATGCACTGGCTTACCTTCACCGGTCCGATATCATCCACCGTGATGTAAAAACCAGCAACATTCTTTTGGACAACAAGTTCCATGTAAAAGTCGCTGATTTCGGTTTGTGTAGGTTGTTTCCACTTGATGTCAGCCATGTCTCAACGGCCCCACAAGGGACCCCAGGATATGTGGACCCAGAGTACTACCAATGCTACCAGCTTACAGACAGGAGCGATGTGTTTAGCTTTGGAGTGGTCTTGATCGAGCTTATATCTTCATTACAAGCAGTAGATACAAGTAGGCATAGGCACGATATTAATCTTGCGAATATGGCGGTGAATAAGATACAGAACCATGCATTGGATGAGTTGGTGGACCCCAGTCTCGGGTTCGATAGGGACTATGGTGTTAGACAGATGGTTACTTCTGTGGCAGAATTGGCTTTTCGGTGCTTGCAACAAAATAGGGAAATGAGGCCGTCTATGGAGGAAGTGGTAGATGTCTTGAGGAGAATAGGGGATGAGAAATTGGGGGCAGAGAAAGCAGAGGTGGTGGATGTTGGAGCGGATGATGTTGGGCTTTTGAAACATATGCTTCCTCCTCTTTCACCGGTTTCTGTTGTGAATGATAAATGGGTTTTCCTGAACCGAACAGTGTAA 2079 44.78 MNSFHSFPPSSFLPLLIFFFTNLIVSSHLYSDCTSSFNCGTITNLTYPFWGRTRPVSCGHPDLKLECEQNMATIEIMKVKYHILEAKPNSKILKLSRQDFIDGSFCRPQFINTTLDPTLFEYGPPGYVNLTLLYGCAPLFVSVPGQFSCPGFGIGYMELGFYVGLGTCNVSVVIPVLEEGLLMKLWDLRKMNEVIKQGFYVKLKVESDCEECLKSGGVCGYDPKLNQPTCYCRDSPRRSKTCPTSTSSVNGASQVPKIPPEAQKKNQKPLKIGLAIGAVFLLAIFVACWSFYIKQRKKYVLQSKDLSTPPSSKENNNNNVSTTLITTNLSLTRSIPPYPSSTLSLQNRSSYFGAQVFSYMDLQKATDNFHPSRELGNGGYGTVYYGKLDDGREVAVKCLYENNFKRVEQFMNEVEILTRLQDRNLVKLYGCTSRHGQELLLVYEYIPNGTVADHIHGNKRTNPGPLTWPVRLNIAVETAHALAYLHRSDIIHRDVKTSNILLDNKFHVKVADFGLCRLFPLDVSHVSTAPQGTPGYVDPEYYQCYQLTDRSDVFSFGVVLIELISSLQAVDTSRHRHDINLANMAVNKIQNHALDELVDPSLGFDRDYGVRQMVTSVAELAFRCLQQNREMRPSMEEVVDVLRRIGDEKLGAEKAEVVDVGADDVGLLKHMLPPLSPVSVVNDKWVFLNRTV 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1489818 1494946 + Conep11aG0031300.1 Cone11ag0305 447557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0305 692 FunFam Wall-associated receptor kinase-like 20 446 655 - -
Cone11ag0305 692 CDD STKc_IRAK 375 645 - -
Cone11ag0305 692 Gene3D Transferase(Phosphotransferase) domain 1 446 662 - -
Cone11ag0305 692 SMART serkin_6 369 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0305 692 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247(InterPro)
Cone11ag0305 692 MobiDBLite consensus disorder prediction 236 254 - -
Cone11ag0305 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0305 692 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 689 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone11ag0305 692 Gene3D Phosphorylase Kinase; domain 1 343 445 - -
Cone11ag0305 692 MobiDBLite consensus disorder prediction 236 262 - -
Cone11ag0305 692 ProSiteProfiles Protein kinase domain profile. 369 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0305 692 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
Cone11ag0305 692 Pfam Wall-associated receptor kinase C-terminal 166 234 IPR032872 -
Cone11ag0305 692 Pfam Protein kinase domain 370 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0305 692 SUPERFAMILY Protein kinase-like (PK-like) 351 644 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0305 Cone-Chr11:1489818 Cone19ag0348 Cone-Chr19:2850552 2.29E-160 dispersed
Cone18ag1191 Cone-Chr18:8509018 Cone11ag0305 Cone-Chr11:1489818 2.81E-86 transposed
Cone11ag0305 Cone-Chr11:1489818 Cone13ag0807 Cone-Chr13:7428880 5.55E-122 wgd
Cone11ag0305 Cone-Chr11:1489818 Cone16ag0560 Cone-Chr16:7508271 4.21E-211 wgd
Cone11ag0305 Cone-Chr11:1489818 Cone18ag1190 Cone-Chr18:8501767 1.51e-310 wgd
Cone11ag0305 Cone-Chr11:1489818 Cone19ag0814 Cone-Chr19:6491436 8.01E-122 wgd
Cone11ag0305 Cone-Chr11:1489818 Cone2ag0439 Cone-Chr2:2358824 6.44E-198 wgd
Cone11ag0305 Cone-Chr11:1489818 Cone6ag0428 Cone-Chr6:2080564 3.90E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000747 2 6 3 2 2 2 3 2 2 4 1 3 3 1 5 3 2 5 3 2 3 1 2 3 5 3 2 2 6 1 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81874 PF00180 Iso_dh 4.10E-92 CL0270 Cone PK