Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0338 ATGCTGAAAACAGAAACAGAAGGCGGGGTCCACAACAGCTGGGCGAGAGTCTGCGACACATGCCGGTCAGCTGCCTGTGCAGTCTACTGTCGAGCCGACTCGGCCTACCTCTGCCGGGCCTGTGATGCCCGCATCCACTCTGCCAACCCCCTGGCCCGCCGCCATGACCGTGTCTGGGTTTGCGAGGCCTGCGAGCGGGCCCCAGCAGCCTTTGTCTGCAAGGCTGACTCGGCCTCCCTCTGTACAGCCTGCGACGCCGACATCCACTCGGCCAACCCCCTGGCCAGCCGCCACCAGCGCGTTCCAATTCTCCCCCTTTCCAGCTTTGTTAATTACGGCACAGAACCCGATACTGAAGACGGGTTCCTAGCCGGAGAGGAACAAGGGGATGAAGAGGATGAAGACGAGGCGGCTTCCTGGTTGCTTTTGAATAACAATGGGACTAACAATAATAACAATTGTAAAATGAATTTGCAGGCTAATGGGTTCTTGTTTGGAGGGGAAGTTGATGAGTATTTGGATCTTGTCGAGTACAACAATAATTCGAATTGTTCCGATCAGTTTAGTACCGATCATCATCATAGTCATCAACAACAGTACATGAATAGTTCATGTGTTTCGGCCAAGAATTACGGAGGGGATCGTGTCGTTCCGATTCAACAGCAGCAGCAGCAACAACAACAACAACAACAACATCAACAACACCATGAACAGAGTTTCCAGTTGGGGTTAGATTGTGACGATTCGTCTAAGCATGGCTTGCATTTCAATGGCTTCATTAGTCACACTGTGTCAATCCCGTCTGCAGATGTTGGAGTCGTGCCAGAATCGACAATGAGTGACATCTTGGTCTCTCACCCAAGACTTCCGAAAGGGACAATTGACCTTTTTTCCGGCACTCCAATTCAAGTTCCAACCCAATTAACCCCCATGGACAGGGAGGCAAGGGTTCAAAGATACAGAGACAAGAAGAAGACAAGGAAGTTCGAGAAGACAATCCGATACGCTTCTCGAAAGGCCTATGCGGAAACCCGGCCCAGAATCAAGGGCCGGTTTGCTAAACGGACCGATGCCGTAGACGTAGAAGTGGACCAGGCGTTCTCCGCCACTTTCATGGCAGAAACTGGATATGGCATTGTCCCAGCATTTTAA 1152 51.3 MLKTETEGGVHNSWARVCDTCRSAACAVYCRADSAYLCRACDARIHSANPLARRHDRVWVCEACERAPAAFVCKADSASLCTACDADIHSANPLASRHQRVPILPLSSFVNYGTEPDTEDGFLAGEEQGDEEDEDEAASWLLLNNNGTNNNNNCKMNLQANGFLFGGEVDEYLDLVEYNNNSNCSDQFSTDHHHSHQQQYMNSSCVSAKNYGGDRVVPIQQQQQQQQQQQQHQQHHEQSFQLGLDCDDSSKHGLHFNGFISHTVSIPSADVGVVPESTMSDILVSHPRLPKGTIDLFSGTPIQVPTQLTPMDREARVQRYRDKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDVEVDQAFSATFMAETGYGIVPAF 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1643363 1645199 + Conep11aG0034700.1 Cone11ag0338 447590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0338 383 CDD Bbox1_BBX-like 60 103 IPR049808 -
Cone11ag0338 383 SMART bboxneu5 61 103 IPR000315 GO:0008270(InterPro)
Cone11ag0338 383 SMART bboxneu5 13 60 IPR000315 GO:0008270(InterPro)
Cone11ag0338 383 Pfam CCT motif 313 355 IPR010402 GO:0005515(InterPro)
Cone11ag0338 383 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
Cone11ag0338 383 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270(InterPro)
Cone11ag0338 383 CDD Bbox1_BBX-like 17 60 IPR049808 -
Cone11ag0338 383 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515(InterPro)
Cone11ag0338 383 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 371 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cone11ag0338 383 MobiDBLite consensus disorder prediction 219 239 - -
Cone11ag0338 383 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0338 Cone-Chr11:1643363 Cone7ag1644 Cone-Chr7:11095778 6.05E-31 dispersed
Cone9ag0795 Cone-Chr9:3819706 Cone11ag0338 Cone-Chr11:1643363 1.89E-06 dispersed
Cone11ag0338 Cone-Chr11:1643363 Cone18ag1163 Cone-Chr18:8358152 1.09E-97 wgd
Cone11ag0338 Cone-Chr11:1643363 Cone6ag0443 Cone-Chr6:2161648 1.13E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44301 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0338 K12135 - mdm:103404672 470.7