Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0371 ATGGTGAGAGGAAAGACTCAGATGAAGAGAATAGAGAACGCGACGAGCCGGCAAGTAACGTTCTCTAAGCGGCGAAACGGGCTTCTGAAAAAGGCGTTTGAGCTCTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCTACAAGAGGCAAGCTCTACGAATTTGCAAGCTCTAGCATTCATTCAACAATTGAGCGTTATAGGAATCACAGCAAAGAAGCTGGAACCACTTCCAGATCTCCTCAACAAAATATTCAACAATTGAAGCTTGAGAACACAAATATGAGGAAGAAGATAGAGCTACTTGAAGTTGCAAAAAGGAAACTAATAGGAGAAGATTTAGGATCATGTTCCTATGAAGAACTTCAACAGATTGAACAACAGTTGAAGAGGAGTGTAAAAAACATCAGAGCAAGAAAGACACAGGTTTACAAGGAACAGATTGAACAACTAAAAGAAAATGAAAGATTCCTACAAGCTGAAAATGCAAGCCTAAATGAGAAGCTTCAATTTACCGTTCAAACCCTGGCACCTAATGAACCAAGAGAAAGCAATCTGATTTCAGATGTCGATACCGGATTGTTCGTGGGATGGCCGGAAACAAGGGGAGAGCGACTTCTCTTACAAAACTGA 639 41.47 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFASSSIHSTIERYRNHSKEAGTTSRSPQQNIQQLKLENTNMRKKIELLEVAKRKLIGEDLGSCSYEELQQIEQQLKRSVKNIRARKTQVYKEQIEQLKENERFLQAENASLNEKLQFTVQTLAPNEPRESNLISDVDTGLFVGWPETRGERLLLQN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1820746 1823820 + Conep11aG0038100.1 Cone11ag0371 447623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0371 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone11ag0371 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 Coils Coil 87 107 - -
Cone11ag0371 212 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone11ag0371 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 Coils Coil 121 170 - -
Cone11ag0371 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Cone11ag0371 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 Pfam K-box region 83 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone11ag0371 212 Gene3D - 14 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone11ag0371 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0371 Cone-Chr11:1820746 Cone15ag0346 Cone-Chr15:1607150 1.34E-71 dispersed
Cone11ag0371 Cone-Chr11:1820746 Cone18ag1119 Cone-Chr18:8126848 2.38E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44303 PF00069 Pkinase 1.50E-43 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0371 - - - 0.0