Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0388 ATGGAAAACCTTACGGCACATGGCGGCGGCCGACCGGTACTGCCTCCACAATTTCTCTCCGGCAGGCCAGATCTTCACCTCCACCCCCACCACCAATTCAACCCTCACCCCCACCACCACCAAAACCAACAAACCTCCGAAGAGGACGACGAACAAGCCGAGAGCCAAAGCCGGAGCGGTGGAAGCAGCTTAAACCAGCATCACAACAACTCCGACCAGCCCTCTAACGGACCGGACTCATCGAGAAGGTCACCATCTTCAATCAGAAGGCCACGCGGCCGCCCCTCCGGTTCGAAAAACAAACCTAAGCCCCCCATCATAATAACCCGAGACAGTCCCAACGCGCTCCGGTCCCACGTGATGGAAATCGCTAACGAATGTGACGTCATGGAGAGCCTGACAACCTTTGCACGGCGGAGGCAGAGAGGGGTTTGTATTCTAAGCGGGACAGGAACCGTCGCTAATGTTACTCTAAAGCAGCCAGCTTCGCCTGGTGCGGTGGTTACTTTACATGGAAGGTTTGAAATCTTATCGCTTTCCGGTTCATTTCTGCCGCCGCCAGCCCCGCCTGCCGCTTCGGGTTTGACGATATATCTGGCCGGAGGGCAAGGGCAGGTGGTGGGAGGAAGCGTGGTGGGCCAGCTTTTAGCGGCGGGGCCTGTTGTTGTTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAGAGGTTGCCGCTTGAGGATGAAGATATTGTACCAGCAGGGACGGGCGGTGGTCCGGTGCCCGAAAATAGCCCGATCGGAGGACAGCAACAGTTATTGAATGGAGATAGCTCTAACGCGTCGTCTGGTTTGTTTCATGGGATGCCGCAAAATTTACTAAATTCACCTGATCAGGCATTCTGGGCCACACCTCGTCCACCTTACTGA 906 55.74 MENLTAHGGGRPVLPPQFLSGRPDLHLHPHHQFNPHPHHHQNQQTSEEDDEQAESQSRSGGSSLNQHHNNSDQPSNGPDSSRRSPSSIRRPRGRPSGSKNKPKPPIIITRDSPNALRSHVMEIANECDVMESLTTFARRRQRGVCILSGTGTVANVTLKQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGQLLAAGPVVVMAASFGNAAYERLPLEDEDIVPAGTGGGPVPENSPIGGQQQLLNGDSSNASSGLFHGMPQNLLNSPDQAFWATPRPPY 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1912189 1913094 + Conep11aG0039900.1 Cone11ag0388 447640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0388 301 ProSiteProfiles PPC domain profile profile. 113 250 IPR005175 -
Cone11ag0388 301 MobiDBLite consensus disorder prediction 257 291 - -
Cone11ag0388 301 PIRSF ESCAROLA 24 298 IPR014476 GO:0003680(InterPro)
Cone11ag0388 301 Gene3D - 116 244 - -
Cone11ag0388 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 300 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone11ag0388 301 FunFam AT-hook motif nuclear-localized protein 116 243 - -
Cone11ag0388 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 244 - -
Cone11ag0388 301 MobiDBLite consensus disorder prediction 41 55 - -
Cone11ag0388 301 MobiDBLite consensus disorder prediction 56 84 - -
Cone11ag0388 301 CDD DUF296 117 184 IPR005175 -
Cone11ag0388 301 MobiDBLite consensus disorder prediction 1 114 - -
Cone11ag0388 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 228 IPR005175 -
Cone11ag0388 301 MobiDBLite consensus disorder prediction 243 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1200 Cone-Chr10:8859148 Cone11ag0388 Cone-Chr11:1912189 1.46E-70 dispersed
Cone11ag0388 Cone-Chr11:1912189 Cone14ag0309 Cone-Chr14:1438102 2.28E-99 dispersed
Cone11ag0388 Cone-Chr11:1912189 Cone14ag0306 Cone-Chr14:1406920 1.35E-18 wgd
Cone11ag0388 Cone-Chr11:1912189 Cone15ag0333 Cone-Chr15:1527904 1.24E-17 wgd
Cone11ag0388 Cone-Chr11:1912189 Cone18ag1132 Cone-Chr18:8173667 1.60E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0388 - - - 0.0