Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0391 ATGTGGTTGTCCCGTCAAGAAGAAGAGGAGGCCACCGGTCCAATCCTGACGGTGCTGTCTGCCAGTTTTATTAAAAACGCCCACCGTGGGGCTCGAACCCACGACCACAAGTGGGCTTGGATTCGCTTAGAAATCAAACTTCAAACTACCAAAGCGCAGGACAACAATTCAGTTGCAGAGCGGCGGGGCGCAGAGAAAAAAAGCGACTCAAACATGTCTGTTACTTTGCATACAAACCTCGGCGATATCAAGTGCGAGATTTTCTGCGACGAAGTCCCTAAGGCAGCAGAGAATTTTTTGGCATTATGCGGCAGTGGTTACTATGATGGAACCATATTTCATCGAAATATCAAAGGTTTTATGATACAAGGTGGAGATCCAACTGGGACGGGCAAAGGCGGAACCAGCATTTGGGGCAAGAAATTCAGCGACGAGATTAGAGAGTCTCTTAAGCACAATGCGAGAGGGATGTTATCAATGGCGAATAGCGGACCCAATACAAATGGCAGCCAGTTCTTCATAACTTATGCAAAGCAGCCACATCTCAATGGATTGTACACAATATTCGGCCGGGTCATTCATGGCTTTGAAGTTCTTGATATCATGGAAAAGACTCAGACTGGGTCCGGGGATAGACCTCTTGCAGAGATCCGGCTCAACCGTGTGACTGTTCATGCCAACCCACTTGCCACCTAA 696 47.84 MWLSRQEEEEATGPILTVLSASFIKNAHRGARTHDHKWAWIRLEIKLQTTKAQDNNSVAERRGAEKKSDSNMSVTLHTNLGDIKCEIFCDEVPKAAENFLALCGSGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFSDEIRESLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGRVIHGFEVLDIMEKTQTGSGDRPLAEIRLNRVTVHANPLAT 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1927903 1930187 - Conep11aG0040200.1 Cone11ag0391 447643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0391 231 CDD Cyclophilin_PPIL3_like 72 224 - -
Cone11ag0391 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 183 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 156 171 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 87 102 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 74 224 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 65 221 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cone11ag0391 231 SUPERFAMILY Cyclophilin-like 72 228 IPR029000 -
Cone11ag0391 231 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 224 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone11ag0391 231 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 108 125 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cone11ag0391 231 Gene3D - 52 231 IPR029000 -
Cone11ag0391 231 FunFam Peptidyl-prolyl cis-trans isomerase 72 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0391 Cone-Chr11:1927903 Cone9ag1380 Cone-Chr9:10325393 1.20E-56 dispersed
Cone11ag0391 Cone-Chr11:1927903 Cone6ag1459 Cone-Chr6:11655955 1.14E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0391 K12734 - ath:AT1G01940 314.694