Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0395 ATGGGTCGCTCGTCATGGCACCTTTTCAACAAGCCCGTGTTTTCCTCACTTTTTCTGAAGCTCTTTCTACTTTTCTGTGTCTGCTCCATCACTCAAATCGAAGCTCTTACGGGTTACTCGGACAAATCGGTGCTTCTTCAGCTGAAGAATTCGTTATTGGACGAGTCGGGATTGCTCTCGAGCTGGAGGTCGAACAATTCCGATCACTGTTCATGGTTCGGAATCTCATGCGACTTCAATTCTCGAGTCATCTCGCTGTACATTTTGGGAAATGGCGGCGGCGAGGGTAAGAAAAATTCAGGTGCTTTTTCATGCTCTGATTTCTCTAAATTTCCGCTTTATGGATTGGGGATTAGGAGAAATTGCACAGGAAGCCGGGGGAAACTTTCCGGTAAGATATCGCCTGTCATTTCCGAGCTAAGTGAGCTTAGAAACCTGTCGCTTCCTTTCAATGGATTTGTTGGTGAAATCCCTAGTGAAATATGGGCTATGAACAGCTTAGAGGTTCTTAATCTAGAGGGAAATTCAATATCTGGGATTCTTCCAAAGAACTTTTCCGGATTAAGGAATTTGCGGGTTCTCAATCTCGGATTTAACAGCATCCAAGGTGAAATTCCGACCTCGCTTTCTAGCTGTGTCAGTTTAGACATCTTAAATTTGGCTGGAAATCAGTTTAATGGGACGATTCCGGGTTTTCTGGGTCACTTGGAACAGGTATATTTGTCTTTTAACTCGTTCACCGGATCTATTCCTAGTGAGCTTGGGGATTATTGTGGGAAGCTTGAACATTTAGATTTGTCGGGTAATTTCTTGGTTCGGGGGATTCCTAACAGTTTGGGGAATTGCAGTCAGTTACAGACATTGCTGCTCTATTCAAACATGTTGGAAGAGGTAATTCCTTCCGAAATCGGTAAGCTTCAAAAGCTCAAAGTGCTTGATCTTTCTAGGAACAGTTTAAGTGGTTCTATTCCTCCTCAGCTCGGAAACTGTACAGAATTGTCTGTACTTGTGCTCTCAAATCTATTTCAAGTTAGTAATACTCATGGGAATTCTCCATTAGATGGGATGAGTAGTGAGATCAGTACGGATGAGTATAATTTCTTTCGGGGTGAAATCCCCAAGGAAATTTCAATTCTTCCAAAGTTGAGGATTTTGTGGGCTCCACGGACAATCCTTGAGGGCAGGTTTCCTAGCAATTGGGGCAGATGTGAAAGCCTAGAGATGATCAACTTGGCTCAAAATCTTCTCTCTGGTGAGCTTCCAAGAGGGTTAAGCCAATGCAAGAAGCTGCAATTCCTTGACCTGAGCGCAAACAGGCTTTCTGGGCCACTAAATCAAGACCTTCCGGTTCCTTGCATGATCTTTTCCGATATCAGTGGCAACCAAATGGCAGGTCCCATTCCAGTTTTCAGTAAAAACCCCTGCCTACCTGTTTCTTACTCCTTGAACAAATTTGCTTTTGAATCAGACGATCCGTCTTCTCAATATTTTTGGTTTTTCGCTACTAGAGCTCAAGCTTCAAACAAATTGCCAATTGTTGATGGTGATAGTCTCGTAGTATTTCACAATTTCGGACAGAATAATTTTTCCAGTAGTCTACAGTCATTGGCCATTGCACCCGAAAGATTAGGAAAGCAAACTGTTTATGCATATCTTGCTGGAGGAAACAAGCTCACTGGACCATTTCCTCATATTTTACTCGAAAATTGTGGAGGACTAAAAGCTCTGATTGTGAATGTTAGCAATAACAAGATATCCGGGCCGATTCCAGGCGAAATCAGTGAAATGTGTGCTCTTAAAATTTTGGATGCATCTGAGAATCAGATTAATGGATCAATCCCCTCGAGTTTCGGGAAATTGTCTTTAGATGTTATAAACTTGAGCCGGAACCTTTTGCAGAGTCAAATCCCCTTCAGTCTAGGCCGAATTGCTACTCTGAAGCATCTCTCTTTGGCGCATAATAACCTGACGGGTCCCATCCCTTCCAGCTTGGGACAGTTGCACAGTCTGGAGTCGCTCGATCTTTCTTCCAACTCTCTCACTGGTGAAATCCCACAAGATATTGTAAAACTCAGAAGCTTGACCCTTCTCCTCCTCAACAACAATATACTCTCTGGCCAGATCCCAGATGGGCTAGCAAATGTGGCCACCCTCTCCTCATTCAACGTTTCCTTCAACAACTTGTCAGGGTCACTTCCATCAAATAACAACTTGATGAAATGTAGTAGTGTTCTTGGAAACCCTCTTTTACGGCCATGCCGTATGTTCTCCCTTACCGTTCCATCATCTGATTTGGCAAGTTCCAATCTTTCTGCTTCACCTTCAAATTATCCAACCCAAAGTAGTGGCAGTGGTATGAATTCAATCGAGATAGCATCCATAACCTCTGCATCGGCTATTGTCTCGGTCCTTCTAGCACTAATTGTCTTGTTCATATATTCCCGGAAATGGAAACCCAGGTCCAAAGTCCATGGCTCATCCAAAAAGGATGTCTGTCTCTTTACAGACATAGGGGTCCCAATAACTTTTGAAAACGTTGTCCAAGCCACTAATAACTTCAATGCTTCCAATTGTATTGGAAGTGGAGGTTTTGGTGCAACTTATAAGGCCGAGATCTCTCCTGAAGTGGTTGTGGCTATAAAACGACTCTCTATGGGCCGGTTTCAAGGAGTCCAACAATTCCACACAGAAGTCAAAACCCTTGGAAGGCTTAGACATCCAAATCTAGTCACTCTAATCGGTTATCATGCAAGTGAAACTGAAATGTTCCTTATATACAACTTCTTGCCTGGGGGTAATTTGGAGAAATTCATCCGGGAAAGATCAACTAGGGCTATTGATTGGAGAATACTTCACAAGATTGCTCTAGATATCGCTCGAGCCCTGACATACCTTCACGACCAGTGTGTTCCTAGAGTGCTCCACAGAGATGTCAAACCGAGCAATATTTTGATAGATGATGATTTCAATGCCTATCTCTCTGATTTCGGATTGGCCCGGCTTCTGGGTACTTCCGAGACTCATGCCACAACGGGTGTAGCCGGAACTTTCGGCTATGTGGCCCCAGAGTATGCAATGACATGTCGGGTTTCGGATAAGGCAGATGTGTACAGTTATGGGGTGGTGCTGCTTGAGTTGCTTTCGGATAAGAAAGCCTTGGATCCATCGTTTTCGTCTTATGGGAACGGGTTTAACATTGTGGCGTTGGCGTGTATGTTATTAAGACAAGGCCGAGCAAAGGAGTTCTTTATGGCCGGGTTGTGGGATGTGGGCCCACACGATGATTTGGTGGAGATGTTACACTTGGCAGTTGTGTGTACGGTGGATTCTCTCTCTTACCGGCCTACGATGAAGCAGGTTGTTAGGCGCTTAAAGCAGCTTCAACCGCCTTCATGTTAG 3399 44.04 MGRSSWHLFNKPVFSSLFLKLFLLFCVCSITQIEALTGYSDKSVLLQLKNSLLDESGLLSSWRSNNSDHCSWFGISCDFNSRVISLYILGNGGGEGKKNSGAFSCSDFSKFPLYGLGIRRNCTGSRGKLSGKISPVISELSELRNLSLPFNGFVGEIPSEIWAMNSLEVLNLEGNSISGILPKNFSGLRNLRVLNLGFNSIQGEIPTSLSSCVSLDILNLAGNQFNGTIPGFLGHLEQVYLSFNSFTGSIPSELGDYCGKLEHLDLSGNFLVRGIPNSLGNCSQLQTLLLYSNMLEEVIPSEIGKLQKLKVLDLSRNSLSGSIPPQLGNCTELSVLVLSNLFQVSNTHGNSPLDGMSSEISTDEYNFFRGEIPKEISILPKLRILWAPRTILEGRFPSNWGRCESLEMINLAQNLLSGELPRGLSQCKKLQFLDLSANRLSGPLNQDLPVPCMIFSDISGNQMAGPIPVFSKNPCLPVSYSLNKFAFESDDPSSQYFWFFATRAQASNKLPIVDGDSLVVFHNFGQNNFSSSLQSLAIAPERLGKQTVYAYLAGGNKLTGPFPHILLENCGGLKALIVNVSNNKISGPIPGEISEMCALKILDASENQINGSIPSSFGKLSLDVINLSRNLLQSQIPFSLGRIATLKHLSLAHNNLTGPIPSSLGQLHSLESLDLSSNSLTGEIPQDIVKLRSLTLLLLNNNILSGQIPDGLANVATLSSFNVSFNNLSGSLPSNNNLMKCSSVLGNPLLRPCRMFSLTVPSSDLASSNLSASPSNYPTQSSGSGMNSIEIASITSASAIVSVLLALIVLFIYSRKWKPRSKVHGSSKKDVCLFTDIGVPITFENVVQATNNFNASNCIGSGGFGATYKAEISPEVVVAIKRLSMGRFQGVQQFHTEVKTLGRLRHPNLVTLIGYHASETEMFLIYNFLPGGNLEKFIRERSTRAIDWRILHKIALDIARALTYLHDQCVPRVLHRDVKPSNILIDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVALACMLLRQGRAKEFFMAGLWDVGPHDDLVEMLHLAVVCTVDSLSYRPTMKQVVRRLKQLQPPSC 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1946801 1950739 + Conep11aG0040600.1 Cone11ag0395 447647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0395 1132 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Cone11ag0395 1132 Gene3D Ribonuclease Inhibitor 38 233 IPR032675 -
Cone11ag0395 1132 ProSiteProfiles Protein kinase domain profile. 853 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0395 1132 SMART serkin_6 853 1105 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0395 1132 Gene3D Ribonuclease Inhibitor 235 342 IPR032675 -
Cone11ag0395 1132 SUPERFAMILY Protein kinase-like (PK-like) 835 1124 IPR011009 -
Cone11ag0395 1132 CDD STKc_IRAK 859 1127 - -
Cone11ag0395 1132 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 Pfam Leucine Rich Repeat 599 620 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 Pfam Leucine Rich Repeat 235 255 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 973 985 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0395 1132 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 Pfam Leucine rich repeat 645 702 IPR001611 GO:0005515(InterPro)
Cone11ag0395 1132 Gene3D Ribonuclease Inhibitor 522 757 IPR032675 -
Cone11ag0395 1132 Gene3D Ribonuclease Inhibitor 362 494 IPR032675 -
Cone11ag0395 1132 SUPERFAMILY L domain-like 39 341 - -
Cone11ag0395 1132 SMART LRR_typ_2 667 691 IPR003591 -
Cone11ag0395 1132 SMART LRR_typ_2 306 330 IPR003591 -
Cone11ag0395 1132 SMART LRR_typ_2 164 187 IPR003591 -
Cone11ag0395 1132 SMART LRR_typ_2 188 212 IPR003591 -
Cone11ag0395 1132 SMART LRR_typ_2 258 282 IPR003591 -
Cone11ag0395 1132 SMART LRR_typ_2 233 257 IPR003591 -
Cone11ag0395 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 525 1127 IPR051564 GO:0016020(PANTHER)
Cone11ag0395 1132 Pfam Protein kinase domain 856 1054 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0395 1132 Gene3D Transferase(Phosphotransferase) domain 1 929 1129 - -
Cone11ag0395 1132 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 362 444 - -
Cone11ag0395 1132 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 517 758 - -
Cone11ag0395 1132 SUPERFAMILY L domain-like 240 738 - -
Cone11ag0395 1132 ProSitePatterns Protein kinases ATP-binding region signature. 859 881 IPR017441 GO:0005524(InterPro)
Cone11ag0395 1132 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 256 346 - -
Cone11ag0395 1132 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 929 1131 - -
Cone11ag0395 1132 PRINTS Leucine-rich repeat signature 667 680 - -
Cone11ag0395 1132 PRINTS Leucine-rich repeat signature 309 322 - -
Cone11ag0395 1132 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 817 928 - -
Cone11ag0395 1132 Gene3D Phosphorylase Kinase; domain 1 815 928 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0395 Cone-Chr11:1946801 Cone13ag0906 Cone-Chr13:7982991 3.43E-279 dispersed
Cone11ag0395 Cone-Chr11:1946801 Cone18ag1137 Cone-Chr18:8197882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81880 PF02485 Branch 2.00E-80 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0395 - - - 0.0