Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag0406 | ATGAGTTTTGGGGGTTTTCTAGACAACAGTACTTCTACCGGCGGTGGTAAATTCGTCGGCGATTTACAACCTTTCACTAACACCGACGAAAACAACAATATTATGCCTTCTACTACTACAATCACTCACCCGCCTCGCCTCGTCACTCAATCATTAACCAAATCCATGTTCAACTCTCCTGGACTTTCCCTCGCTCTTACAAATATAGATCATGGGCAAGGAGAGATGATGAGCAGTAGTACTCCAAGAATGGCGGGTGATAATAATCAGAACTTTGAGGCTAATAACGTCTGGAAAAGAAGCAGAGAAGAACTCGAACATGAGAGTAGATCTGGTAGTGATAACATGGATGGTGGCTCTGGCGACGATCAAGATGCCGCCGATAATAACCCTCCTAGAAAAAAACGCTACCACCGCCATACTCCTCAGCAAATCCAAGAGCTTGAAGCTTTGTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTGGAGCTAAGCAAAAGGCTTTGTTTGGAAACTAGGCAAGTCAAATTCTGGTTCCAAAATCGTCGAACCCAAATGAAAACACAGTTGGAACGGCATGATAATTCATTACTCAGGCAAGATAACGATAAGCTTAGAGCGGAGAACATGTCTATCCGGGAAGCCATGAGAAACCCCATGTGCTCAAACTGCGGTGGGCCTGCTATTATTGGCGAAATCTCACTCGAGGAGCAGCATCTCCGGATCGAGAACGCCCGGTTGAAAGATGAGCTGGACCGGGTTTGTGCCCTAGCGGGCAAGTTTCTGGGTCGGCCCATTTCATCGTTATCTAATTCTATGGCACAACCATTGCCAAACTCGAGCTTGGAGCTTGGAGTTGGAAGTAATGGATTTGGAGGGATGGGCCCTACAACAATGCCCATGGGGCCCGATTTCGGAGGTGGGATTTCTACTACTTTACAGGTCTTACCAAGTAGTACTAGTAGACCTATGGGGGGAATAGTTCCAGGCCTTGATCTTTCGATGGAGAGGTCTATGTTCTTAGAGCTTGCTTTGGTTGCTATGGATGAGTTGGTTAAGATGGCTCAGACCGATGAGCCGCTCTGGGTCCGGAGCTTGGAAGGAGGAAGGGAAATTCTAAACCATGAAGAATATTCTAGATCATCCACTTCTTGCATTGGCTTGAAACCGAATGGTTTTGTCACGGAAGCTTCTAGAGAGTCCGGTATGGTCATCATCAATAGCTTGGCTCTTGTCGAAACTCTAATGGACTCGAATCGCTGGGCAGAGATGTTTCCTAGTATAATTGCGAGAAGCACCACCATGGATGTGATCTCTAACGGCATGGGTGGGACCCGAAACGGAGCACTTCAACTGATGCATGCTGAGCTTCAAGTACTTTCACCTTTGGTTCCGATTCGGGAAGTGAGCTTCCTTAGATTCTGCAAACAACATGCTGAAGGAGTTTGGGCGGTTGTGGACGTATCGATCGACGCCATGAGAGAAGGTACTCCAGGTGGACCTACACCGTTCGCGAATTGTAGAAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGCCTAATGGCTACTCTAAGGTTACATGGGTTGAACATGCAGAATACGATGAGACCCAAGTCCATCAACTCTATCGTGCCTTGCTGAGCTCCAGCATGGGGTTCGGGGCCCAACGTTGGGTGGCCACCCTCCAACGCCAGTGCGAATGCCTTGCCATCCTCATCTCCTCCATTGTCCCATCCCGAGAAAACACTGCTATAACAGCAGGTGGGAGGAGGAGCATGCTAAAGCTGGCTCAGAGGATGACGGACAACTTCTGTGCCGGGGTGTGTGCTTCTACTATCCACAAATGGAACAAGCTCAATGCTGGGAATGTGGGCGAGGATGTTCGGGTAATGACCCGAAAGAGCATCGATGATCCAGGCGAGCCGCCCGGTGTTGTCCTCAGTGCCGCCACATCAGTTTGGCTCCCAGTCTCTCCCCAGAGACTGTTTGATTTTCTTCGTGACGAGAGGTTGAGAAGCGAGTGGGACATACTTTCCAATGGCGGTCCCATGCAAGAGATGGCTCACATTGCCAAAGGCCAAGATCACGGCAACTGCGTCTCTCTCCTACGAGCTAGCGCAATGAAAGCGAACCACAGTAGCATGCTGATACTGCAGGAGACCTGCATAGACGCGGCTGGATCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCATGTGGTCATGAACGGTGGAGATTCTGCCTACGTGGCTCTACTCCCATCTGGTTTCGCCATTGTTCCAGATGGACCCGGCTCCCGTGAGCCAGCAGCCCATATTAATGGCCCAGACGGTGGCGGCGGTCCACAGAGAGTGAGTGGGTCCCTCCTAACCGTGGCCTTTCAGATCCTGGTCAATAGCCTCCCTACGGACAAGCTCACAGTAGAGTCGGTGGAGACGGTCAACAATCTTATCTCGTGCACCGTCCAGAAGATCAAGGCCGCCCTTCATTGCGAAAGTTGA | 2514 | 50.28 | MSFGGFLDNSTSTGGGKFVGDLQPFTNTDENNNIMPSTTTITHPPRLVTQSLTKSMFNSPGLSLALTNIDHGQGEMMSSSTPRMAGDNNQNFEANNVWKRSREELEHESRSGSDNMDGGSGDDQDAADNNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHDNSLLRQDNDKLRAENMSIREAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLSNSMAQPLPNSSLELGVGSNGFGGMGPTTMPMGPDFGGGISTTLQVLPSSTSRPMGGIVPGLDLSMERSMFLELALVAMDELVKMAQTDEPLWVRSLEGGREILNHEEYSRSSTSCIGLKPNGFVTEASRESGMVIINSLALVETLMDSNRWAEMFPSIIARSTTMDVISNGMGGTRNGALQLMHAELQVLSPLVPIREVSFLRFCKQHAEGVWAVVDVSIDAMREGTPGGPTPFANCRRLPSGCVVQDMPNGYSKVTWVEHAEYDETQVHQLYRALLSSSMGFGAQRWVATLQRQCECLAILISSIVPSRENTAITAGGRRSMLKLAQRMTDNFCAGVCASTIHKWNKLNAGNVGEDVRVMTRKSIDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMKANHSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSREPAAHINGPDGGGGPQRVSGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKAALHCES | 837 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2008083 | 2013857 | + | Conep11aG0041700.1 | Cone11ag0406 | 447658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag0406 | 837 | SUPERFAMILY | Bet v1-like | 591 | 822 | - | - | |
Cone11ag0406 | 837 | ProSiteProfiles | 'Homeobox' domain profile. | 131 | 191 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0406 | 837 | SUPERFAMILY | Homeodomain-like | 117 | 191 | IPR009057 | - | |
Cone11ag0406 | 837 | Pfam | START domain | 345 | 570 | IPR002913 | GO:0008289(InterPro) | |
Cone11ag0406 | 837 | SMART | START_1 | 344 | 570 | IPR002913 | GO:0008289(InterPro) | |
Cone11ag0406 | 837 | SMART | HOX_1 | 132 | 195 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0406 | 837 | CDD | START_ArGLABRA2_like | 339 | 569 | - | - | |
Cone11ag0406 | 837 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cone11ag0406 | 837 | MobiDBLite | consensus disorder prediction | 24 | 42 | - | - | |
Cone11ag0406 | 837 | SUPERFAMILY | Bet v1-like | 336 | 570 | - | - | |
Cone11ag0406 | 837 | ProSitePatterns | 'Homeobox' domain signature. | 166 | 189 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cone11ag0406 | 837 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cone11ag0406 | 837 | Gene3D | - | 121 | 207 | - | - | |
Cone11ag0406 | 837 | CDD | homeodomain | 133 | 191 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0406 | 837 | MobiDBLite | consensus disorder prediction | 101 | 141 | - | - | |
Cone11ag0406 | 837 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 344 | 569 | - | - | |
Cone11ag0406 | 837 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 111 | 836 | IPR042160 | - | |
Cone11ag0406 | 837 | FunFam | Homeobox-leucine zipper protein HDG1 | 120 | 207 | - | - | |
Cone11ag0406 | 837 | ProSiteProfiles | START domain profile. | 335 | 573 | IPR002913 | GO:0008289(InterPro) | |
Cone11ag0406 | 837 | Pfam | Homeodomain | 134 | 189 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0406 | Cone-Chr11:2008083 | Cone12ag1384 | Cone-Chr12:10229796 | 3.16E-268 | dispersed | |
Cone11ag0406 | Cone-Chr11:2008083 | Cone14ag0331 | Cone-Chr14:1544963 | 1.32E-263 | wgd | |
Cone11ag0406 | Cone-Chr11:2008083 | Cone14ag0104 | Cone-Chr14:484646 | 3.34E-298 | wgd | |
Cone11ag0406 | Cone-Chr11:2008083 | Cone15ag0360 | Cone-Chr15:1665508 | 3.38E-295 | wgd | |
Cone11ag0406 | Cone-Chr11:2008083 | Cone15ag0108 | Cone-Chr15:520933 | 8.28E-294 | wgd | |
Cone11ag0406 | Cone-Chr11:2008083 | Cone18ag1103 | Cone-Chr18:8049457 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44306 | PF01251 | Ribosomal_S7e | 9.10E-80 | CL0652 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag0406 | K09338 | - | rcu:8258519 | 1297.34 |