Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0406 ATGAGTTTTGGGGGTTTTCTAGACAACAGTACTTCTACCGGCGGTGGTAAATTCGTCGGCGATTTACAACCTTTCACTAACACCGACGAAAACAACAATATTATGCCTTCTACTACTACAATCACTCACCCGCCTCGCCTCGTCACTCAATCATTAACCAAATCCATGTTCAACTCTCCTGGACTTTCCCTCGCTCTTACAAATATAGATCATGGGCAAGGAGAGATGATGAGCAGTAGTACTCCAAGAATGGCGGGTGATAATAATCAGAACTTTGAGGCTAATAACGTCTGGAAAAGAAGCAGAGAAGAACTCGAACATGAGAGTAGATCTGGTAGTGATAACATGGATGGTGGCTCTGGCGACGATCAAGATGCCGCCGATAATAACCCTCCTAGAAAAAAACGCTACCACCGCCATACTCCTCAGCAAATCCAAGAGCTTGAAGCTTTGTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTGGAGCTAAGCAAAAGGCTTTGTTTGGAAACTAGGCAAGTCAAATTCTGGTTCCAAAATCGTCGAACCCAAATGAAAACACAGTTGGAACGGCATGATAATTCATTACTCAGGCAAGATAACGATAAGCTTAGAGCGGAGAACATGTCTATCCGGGAAGCCATGAGAAACCCCATGTGCTCAAACTGCGGTGGGCCTGCTATTATTGGCGAAATCTCACTCGAGGAGCAGCATCTCCGGATCGAGAACGCCCGGTTGAAAGATGAGCTGGACCGGGTTTGTGCCCTAGCGGGCAAGTTTCTGGGTCGGCCCATTTCATCGTTATCTAATTCTATGGCACAACCATTGCCAAACTCGAGCTTGGAGCTTGGAGTTGGAAGTAATGGATTTGGAGGGATGGGCCCTACAACAATGCCCATGGGGCCCGATTTCGGAGGTGGGATTTCTACTACTTTACAGGTCTTACCAAGTAGTACTAGTAGACCTATGGGGGGAATAGTTCCAGGCCTTGATCTTTCGATGGAGAGGTCTATGTTCTTAGAGCTTGCTTTGGTTGCTATGGATGAGTTGGTTAAGATGGCTCAGACCGATGAGCCGCTCTGGGTCCGGAGCTTGGAAGGAGGAAGGGAAATTCTAAACCATGAAGAATATTCTAGATCATCCACTTCTTGCATTGGCTTGAAACCGAATGGTTTTGTCACGGAAGCTTCTAGAGAGTCCGGTATGGTCATCATCAATAGCTTGGCTCTTGTCGAAACTCTAATGGACTCGAATCGCTGGGCAGAGATGTTTCCTAGTATAATTGCGAGAAGCACCACCATGGATGTGATCTCTAACGGCATGGGTGGGACCCGAAACGGAGCACTTCAACTGATGCATGCTGAGCTTCAAGTACTTTCACCTTTGGTTCCGATTCGGGAAGTGAGCTTCCTTAGATTCTGCAAACAACATGCTGAAGGAGTTTGGGCGGTTGTGGACGTATCGATCGACGCCATGAGAGAAGGTACTCCAGGTGGACCTACACCGTTCGCGAATTGTAGAAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGCCTAATGGCTACTCTAAGGTTACATGGGTTGAACATGCAGAATACGATGAGACCCAAGTCCATCAACTCTATCGTGCCTTGCTGAGCTCCAGCATGGGGTTCGGGGCCCAACGTTGGGTGGCCACCCTCCAACGCCAGTGCGAATGCCTTGCCATCCTCATCTCCTCCATTGTCCCATCCCGAGAAAACACTGCTATAACAGCAGGTGGGAGGAGGAGCATGCTAAAGCTGGCTCAGAGGATGACGGACAACTTCTGTGCCGGGGTGTGTGCTTCTACTATCCACAAATGGAACAAGCTCAATGCTGGGAATGTGGGCGAGGATGTTCGGGTAATGACCCGAAAGAGCATCGATGATCCAGGCGAGCCGCCCGGTGTTGTCCTCAGTGCCGCCACATCAGTTTGGCTCCCAGTCTCTCCCCAGAGACTGTTTGATTTTCTTCGTGACGAGAGGTTGAGAAGCGAGTGGGACATACTTTCCAATGGCGGTCCCATGCAAGAGATGGCTCACATTGCCAAAGGCCAAGATCACGGCAACTGCGTCTCTCTCCTACGAGCTAGCGCAATGAAAGCGAACCACAGTAGCATGCTGATACTGCAGGAGACCTGCATAGACGCGGCTGGATCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCATGTGGTCATGAACGGTGGAGATTCTGCCTACGTGGCTCTACTCCCATCTGGTTTCGCCATTGTTCCAGATGGACCCGGCTCCCGTGAGCCAGCAGCCCATATTAATGGCCCAGACGGTGGCGGCGGTCCACAGAGAGTGAGTGGGTCCCTCCTAACCGTGGCCTTTCAGATCCTGGTCAATAGCCTCCCTACGGACAAGCTCACAGTAGAGTCGGTGGAGACGGTCAACAATCTTATCTCGTGCACCGTCCAGAAGATCAAGGCCGCCCTTCATTGCGAAAGTTGA 2514 50.28 MSFGGFLDNSTSTGGGKFVGDLQPFTNTDENNNIMPSTTTITHPPRLVTQSLTKSMFNSPGLSLALTNIDHGQGEMMSSSTPRMAGDNNQNFEANNVWKRSREELEHESRSGSDNMDGGSGDDQDAADNNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHDNSLLRQDNDKLRAENMSIREAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLSNSMAQPLPNSSLELGVGSNGFGGMGPTTMPMGPDFGGGISTTLQVLPSSTSRPMGGIVPGLDLSMERSMFLELALVAMDELVKMAQTDEPLWVRSLEGGREILNHEEYSRSSTSCIGLKPNGFVTEASRESGMVIINSLALVETLMDSNRWAEMFPSIIARSTTMDVISNGMGGTRNGALQLMHAELQVLSPLVPIREVSFLRFCKQHAEGVWAVVDVSIDAMREGTPGGPTPFANCRRLPSGCVVQDMPNGYSKVTWVEHAEYDETQVHQLYRALLSSSMGFGAQRWVATLQRQCECLAILISSIVPSRENTAITAGGRRSMLKLAQRMTDNFCAGVCASTIHKWNKLNAGNVGEDVRVMTRKSIDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMKANHSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSREPAAHINGPDGGGGPQRVSGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKAALHCES 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2008083 2013857 + Conep11aG0041700.1 Cone11ag0406 447658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0406 837 SUPERFAMILY Bet v1-like 591 822 - -
Cone11ag0406 837 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cone11ag0406 837 SUPERFAMILY Homeodomain-like 117 191 IPR009057 -
Cone11ag0406 837 Pfam START domain 345 570 IPR002913 GO:0008289(InterPro)
Cone11ag0406 837 SMART START_1 344 570 IPR002913 GO:0008289(InterPro)
Cone11ag0406 837 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cone11ag0406 837 CDD START_ArGLABRA2_like 339 569 - -
Cone11ag0406 837 MobiDBLite consensus disorder prediction 1 42 - -
Cone11ag0406 837 MobiDBLite consensus disorder prediction 24 42 - -
Cone11ag0406 837 SUPERFAMILY Bet v1-like 336 570 - -
Cone11ag0406 837 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone11ag0406 837 MobiDBLite consensus disorder prediction 1 17 - -
Cone11ag0406 837 Gene3D - 121 207 - -
Cone11ag0406 837 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cone11ag0406 837 MobiDBLite consensus disorder prediction 101 141 - -
Cone11ag0406 837 FunFam Homeobox-leucine zipper protein GLABRA 2 344 569 - -
Cone11ag0406 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 111 836 IPR042160 -
Cone11ag0406 837 FunFam Homeobox-leucine zipper protein HDG1 120 207 - -
Cone11ag0406 837 ProSiteProfiles START domain profile. 335 573 IPR002913 GO:0008289(InterPro)
Cone11ag0406 837 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0406 Cone-Chr11:2008083 Cone12ag1384 Cone-Chr12:10229796 3.16E-268 dispersed
Cone11ag0406 Cone-Chr11:2008083 Cone14ag0331 Cone-Chr14:1544963 1.32E-263 wgd
Cone11ag0406 Cone-Chr11:2008083 Cone14ag0104 Cone-Chr14:484646 3.34E-298 wgd
Cone11ag0406 Cone-Chr11:2008083 Cone15ag0360 Cone-Chr15:1665508 3.38E-295 wgd
Cone11ag0406 Cone-Chr11:2008083 Cone15ag0108 Cone-Chr15:520933 8.28E-294 wgd
Cone11ag0406 Cone-Chr11:2008083 Cone18ag1103 Cone-Chr18:8049457 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44306 PF01251 Ribosomal_S7e 9.10E-80 CL0652 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0406 K09338 - rcu:8258519 1297.34