Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0417 ATGGATCGGAGGGACCCTATGGCGTTATCGGGGACACAATCTTATTATATGCAACAGAACCAGAGTGGGACTCAATCTCCATTACAACAAGGGTCCCACACCGGCCTTAGGTCCATAACTAACCCGAACATGCCGTTTCAGGCCAATGCCGGTGGGCCTGGAAATATCGGCCCGACTAGCCTGCCGATAGAAACCACTGCCTCCTCAGGTCTTTCGCCTCACCAAGGGGTCAATTTGAGTGGAGGAGGAGCCTCATCTGGTGAGCCCGTAAAGAGGAAACGGGGCAGGCCCAGGAAGTATGGGCCTGATGGTGGTGGGGGTCGAGGCGGTGGGCCTGTGTCCTTGGCATTGTCTCCGTCATCCTCTGCTACTCAAGGAGGGTCCCAACAGAAACGGAGCAGAGGGCGGCCACCTGGTTCGGGGAAGAAGCATCAGCTAACTTCTTCTTTTGGTGGATTACCATCTGGTTCTGCTGGGGTAGGCTTCACTCCTCATATTATCACCATTGGAGTCGGAGAAGATATAGCCACAAAAATAATGTCGTTTTCGCAGCAAGGGCCGAGAACTGTATGTGTGTTGTCAGCCAATGGTGCTGTCTCTACGGTGACTCTGCGTCAACCCTCAGTGAGTGGAGGCACCGTCACATATGAGGGGCAGTTCGAGATAGTATGTCTATCAGGCTCATTTTTGGTCACCGATAGTGGTGGAACCCGCAACCGCTCTGGTGGTTTAAATGTCTCCCTTGCCAGCCCTGATGGTCGAATAATCGGAGGTGGGGTTGGAGGAGTTCTCATTGCAGCTAGCCCCATTCAGGTGATAGTAGGAAGCTTTATGTGGGGAAGTTCAAAGGCGAAGAACGACAAGAAGAGGGAAGCAGAAGGAGGTGTGATAGACTCGGACCGAAACACAATGGACAATAACATGGACCCACTAAGTAACGTTCCTCCTCATGCTCCAACCAACTTGGTAGGCGTTTGGCCCCTATCTCAGCAAGTCGATATCCGGAACGCACATCACATCGACATTGATTTAATGCGTGGTTGA 1044 52.39 MDRRDPMALSGTQSYYMQQNQSGTQSPLQQGSHTGLRSITNPNMPFQANAGGPGNIGPTSLPIETTASSGLSPHQGVNLSGGGASSGEPVKRKRGRPRKYGPDGGGGRGGGPVSLALSPSSSATQGGSQQKRSRGRPPGSGKKHQLTSSFGGLPSGSAGVGFTPHIITIGVGEDIATKIMSFSQQGPRTVCVLSANGAVSTVTLRQPSVSGGTVTYEGQFEIVCLSGSFLVTDSGGTRNRSGGLNVSLASPDGRIIGGGVGGVLIAASPIQVIVGSFMWGSSKAKNDKKREAEGGVIDSDRNTMDNNMDPLSNVPPHAPTNLVGVWPLSQQVDIRNAHHIDIDLMRG 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2068492 2072273 - Conep11aG0042900.1 Cone11ag0417 447669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0417 347 MobiDBLite consensus disorder prediction 284 305 - -
Cone11ag0417 347 SMART AT_hook_2 91 103 IPR017956 GO:0003677(InterPro)
Cone11ag0417 347 SMART AT_hook_2 131 143 IPR017956 GO:0003677(InterPro)
Cone11ag0417 347 MobiDBLite consensus disorder prediction 284 298 - -
Cone11ag0417 347 FunFam AT-hook motif nuclear-localized protein 1-like 164 294 - -
Cone11ag0417 347 MobiDBLite consensus disorder prediction 115 135 - -
Cone11ag0417 347 CDD DUF296 163 277 IPR005175 -
Cone11ag0417 347 MobiDBLite consensus disorder prediction 11 48 - -
Cone11ag0417 347 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Cone11ag0417 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 289 - -
Cone11ag0417 347 MobiDBLite consensus disorder prediction 1 155 - -
Cone11ag0417 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Cone11ag0417 347 MobiDBLite consensus disorder prediction 59 82 - -
Cone11ag0417 347 Gene3D - 164 297 - -
Cone11ag0417 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 299 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0649 Cone-Chr10:3122384 Cone11ag0417 Cone-Chr11:2068492 2.86E-45 dispersed
Cone11ag0417 Cone-Chr11:2068492 Cone17ag1478 Cone-Chr17:9974559 1.27E-67 dispersed
Cone11ag0417 Cone-Chr11:2068492 Cone14ag0350 Cone-Chr14:1623455 6.34E-96 wgd
Cone11ag0417 Cone-Chr11:2068492 Cone15ag0383 Cone-Chr15:1761417 1.02E-95 wgd
Cone11ag0417 Cone-Chr11:2068492 Cone18ag1088 Cone-Chr18:7983114 2.17E-206 wgd
Cone11ag0417 Cone-Chr11:2068492 Cone6ag0774 Cone-Chr6:3945485 1.98E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0417 - - - 0.0