Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0447 ATGGATGGTGGTGATAATTGGGATCTCCACGCGGTGGTCAGAGCCTGTTGCTCCACCACCACCACCACCGCAACAACCGACTCCGCCGCTGCCGCCACTATCTCCCCTTTCTTCACCGACCCATCAATTTTTTTACCTGATTTTGACGTTGATGATATAAATAATAAATACTCTTCTTCTAGTGACCATTTTAATTTCTCTCTCCAACAACAACAAGAACAACAACCCTTTGAAGAGAAAAACACTACTACCTTTGATCAGGAATTGCATGAGCTTTTCAGGCCCTTCTTCATGCTGTCCGCCAAATATCCACCGCCTCAACCGCCACCGTCACAGCCGCAGCAGCCTCAGCCTCAGCCTCAGCCATCGCCTCCTCCTCCTCCTCTATCTAATGTTCTTCAAATTGCACAACAAAAACAACCTCTTAAGCAACAGTCTCATCCTCCTTCTCATGTCAATATACCAAGATCCAAACGAAGAAAGAACCAGCAGAAGAAAGTATGTCAAGTACCGGCCGAGAGTCTCTCTTCCGACATCTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCGCCATATCCAAGGGGATATTATAGGTGTAGCAGCTCAAAGGGGTGTTTGGCTCGGAAACAAGTGGAGCGGAGCAGATCCGACCCGGGAATATTCATGGTGACCTATACGGCGGAGCACAACCATCCTGCTCCGACCCACAGGAACTCTCTCGCTGGTTCGACTCGTCAAAAGGCGTCTTTCACGGCCGGCCAGACAGTCTCAGGCTCAGGTGACGGGAGCAAATCTCAAACCCTGAATGTTCAGATTAATGGCCCCTCCTCCTCCTCACCTTCTTTGGAGCTGGAAGATGATCAGGTTTTCTTGCCTCAGATGATGATCGGTACGACCTGTGCAGTGCAGTGCAAGGAGGAGAAGGAAGATTGGGGAGAAGAGGAGTTAGGATTAGAAGACGACGATGAATTTGGGATATCGGAGATGGTGGCAATTTCCGGGGATGGTAATTTGCTTGTGGATTGTTTTGAGGTTGATCAGGTGCTGGACGGGACGACTCCGTCGGATGCGTCTGCTGACTGCTTAACCGCTCTGTTTCCGGCAAGTTTTGGTGGCCTTTTTTGGACGGTTAACAATGCCGCCACCGCCGCTGGTGGAATCTGA 1173 50.04 MDGGDNWDLHAVVRACCSTTTTTATTDSAAAATISPFFTDPSIFLPDFDVDDINNKYSSSSDHFNFSLQQQQEQQPFEEKNTTTFDQELHELFRPFFMLSAKYPPPQPPPSQPQQPQPQPQPSPPPPPLSNVLQIAQQKQPLKQQSHPPSHVNIPRSKRRKNQQKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERSRSDPGIFMVTYTAEHNHPAPTHRNSLAGSTRQKASFTAGQTVSGSGDGSKSQTLNVQINGPSSSSPSLELEDDQVFLPQMMIGTTCAVQCKEEKEDWGEEELGLEDDDEFGISEMVAISGDGNLLVDCFEVDQVLDGTTPSDASADCLTALFPASFGGLFWTVNNAATAAGGI 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2253478 2254827 + Conep11aG0045900.1 Cone11ag0447 447699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0447 390 ProSiteProfiles WRKY domain profile. 171 237 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0447 390 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 336 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone11ag0447 390 MobiDBLite consensus disorder prediction 132 152 - -
Cone11ag0447 390 FunFam WRKY transcription factor 22 160 230 - -
Cone11ag0447 390 SUPERFAMILY WRKY DNA-binding domain 174 237 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0447 390 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0447 390 SMART WRKY_cls 176 236 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0447 390 MobiDBLite consensus disorder prediction 101 131 - -
Cone11ag0447 390 MobiDBLite consensus disorder prediction 234 286 - -
Cone11ag0447 390 MobiDBLite consensus disorder prediction 100 170 - -
Cone11ag0447 390 Gene3D WRKY domain 160 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0447 390 MobiDBLite consensus disorder prediction 233 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0447 Cone-Chr11:2253478 Cone9ag1134 Cone-Chr9:7884428 6.54E-41 dispersed
Cone11ag0447 Cone-Chr11:2253478 Cone14ag0387 Cone-Chr14:1810039 7.63E-61 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone14ag0050 Cone-Chr14:312009 9.61E-47 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone15ag0424 Cone-Chr15:2001244 3.60E-57 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone15ag0055 Cone-Chr15:335860 9.25E-45 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone18ag1061 Cone-Chr18:7777622 1.12E-204 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone6ag0812 Cone-Chr6:4127490 1.75E-39 wgd
Cone11ag0447 Cone-Chr11:2253478 Cone9ag0811 Cone-Chr9:3902804 3.39E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44310 PF01490 Aa_trans 3.20E-56 CL0062 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0447 K13425 - gmx:100798084 248.44