Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0475 ATGGGTACTACAGAAGATAAGCCGATACAAGAGTTTGATCAGGAACAGAATCATGGTAGTCCAGATGCTGAGGTTCATAGCAAGCAATCTGGTTATGAAATGCTGAAGAATAGTGTCGTCTTTAGGAGCATAAAGGTTGTAATTTTCTCTAGTAAACTCAACTTTATCATGCCTTTTGGTCCTCTGGCACTTCTTGTCGCCAAACTTACGGGTCACCACGGTTGGGTCTTCTTTCTAAGCTTCTTGGGTATAACACCTCTTGCTGAGCGTTTAGGTTATGCCACAGAGCAGCTGACCTTTTACACAGGTCCTACAGTTGGGGGTCTGTTAAATGCTACTTTTGGGAATGCAACGGAACTGATTATATCGATCTATGCACTGAATAGCGGGATGGTCCGCGTTATTCAGCTATCGCTACTTGGCTCGATACTGTCAAATATGTTGCTTGTTCTTGGATGTGCACTTTTCTGTGGCGGCATTGTTTTTTACAGCAAGGAACAGGTGTTCTGCAAGGCAACGGCTTCTGTGAACTCGGGATTGCTTTTAATGGCGGTCATGGGCCTGTCATTCCCTGCCGTTCTCCACTATACTCACAGTGAGGTGCACTTTGGGAGATCAGAGTTGGCTCTTTCCCGATTTAGCAGTTGCATTATGCTTCTGGCCTATGTTGCCTATCTTTTCTACCAATTTAAGAGTCAGACAAATCTGTATGCTCCATTTACTTTTAGTGAGGAAGGGAATGAGAGTGGAGAAATCTCAGAAGATGATGAATATGAAGAGCCAGAGATGTCAATGTGGGAGTCAATTATTTGGCTTTTTATTATGACTGCATGGATTTCTATTCTATCAGAGTACTTAGTTGATGCCATGAAGGGAGCATCCACTTCGTTGAGAATTCCGGTTTCGTTTATCAGCGTTATATTACTCCCGATCGTCGGGAATGCTGCTGAGCATGCAAGTGCTCTCATGTTTGCCATGAAAGACAAGCTTGATATTTCTTTGGGTGTCGTGATCGGATCATCAGTGCAAATATCTATGTTTCTGATTCCTTTCTGTGTGGTTATCGGTTGGATTATGGGGCAGCCTATGGACTTAAACTTTCAACTGTTCGAAACGGCAACGCTATTTGTAACCGTGATAGTTGTTGCCTTCTTCCTGCAGGAAGGAACTTCGAATTATTTCAAAGGCCTTATGCTTATCCTCTGCTATGTGATTGTTGCTGCCGGTTTTTTCGTACATGTCGATCCTCCCTCGCAAGATGACAGGCAAGTAGGAGAAAAGAGGACATTATAG 1293 43.46 MGTTEDKPIQEFDQEQNHGSPDAEVHSKQSGYEMLKNSVVFRSIKVVIFSSKLNFIMPFGPLALLVAKLTGHHGWVFFLSFLGITPLAERLGYATEQLTFYTGPTVGGLLNATFGNATELIISIYALNSGMVRVIQLSLLGSILSNMLLVLGCALFCGGIVFYSKEQVFCKATASVNSGLLLMAVMGLSFPAVLHYTHSEVHFGRSELALSRFSSCIMLLAYVAYLFYQFKSQTNLYAPFTFSEEGNESGEISEDDEYEEPEMSMWESIIWLFIMTAWISILSEYLVDAMKGASTSLRIPVSFISVILLPIVGNAAEHASALMFAMKDKLDISLGVVIGSSVQISMFLIPFCVVIGWIMGQPMDLNFQLFETATLFVTVIVVAFFLQEGTSNYFKGLMLILCYVIVAAGFFVHVDPPSQDDRQVGEKRTL 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2399847 2402051 - Conep11aG0048700.1 Cone11ag0475 447727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0475 430 FunFam Vacuolar cation/proton exchanger 104 243 - -
Cone11ag0475 430 MobiDBLite consensus disorder prediction 1 22 - -
Cone11ag0475 430 Pfam Sodium/calcium exchanger protein 268 411 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag0475 430 Pfam Sodium/calcium exchanger protein 74 230 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag0475 430 MobiDBLite consensus disorder prediction 1 27 - -
Cone11ag0475 430 Gene3D - 104 255 IPR044880 -
Cone11ag0475 430 Gene3D - 256 410 IPR044880 -
Cone11ag0475 430 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 416 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cone11ag0475 430 FunFam Vacuolar cation/proton exchanger 255 412 - -
Cone11ag0475 430 NCBIfam calcium/proton exchanger 59 411 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0475 Cone-Chr11:2399847 Cone8ag1353 Cone-Chr8:10849714 1.03E-195 dispersed
Cone11ag0475 Cone-Chr11:2399847 Cone17ag0026 Cone-Chr17:185953 2.40E-192 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0475 K07300 - cit:102629460 614.764