Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0487 ATGGGTTCCAGCCAAAATAAATTTGCAAGGTTTGTACATCGAACTCCATGGAGATCTTTAAGCTCCGAATTATTCCTTAGCGATACAATTTCTCCAAGAAGAAGCAGGTCATTCCTCAGAAGGTTTTGGGACTGTATCCAAACAGGATATGAGAGGTTCATGAGAACATGGTTGAGTTCTCAATCTGTAGATGATCATAAGATAAAAAGGCAACTAGAACCAGTATCCAGAAAGAAAGTTCTTGACCCGCAGGGCCCGTTTCTTCTTTTCTGGAATAAGATATTTGAATTCTCATGTGTTCTAGCAGCTGCCTTGGACTCGCTCTTCTTTTACATCCCAATGATTAATTCAACCACCAGATGCCTTACTCTGGACAAACCATTACAGACCACTGCGTGTGTTCTTCGTTCACTCATTGATGCCTTCTATGTTCTTCATATTATCTTTCAGTTTCGTACTGGGTTTATCGCCCCTTCTTCCAGGATATTTGGAAGAGGCGAGTTAGTTGATGATGCTTGGTTGATTGCAAAGAGATACTTCTCTACATACTTCATGATCGACATTTTATCTATTCTTCCACTCCCACAGCTTGTAATACTAGTTGTGGTTCCGGCAACCAAAGGTCCTGTTTCTAAGGTGACAAGGGACCTGTTGACGTATGTAATATTCGTGCAGTATGTTCCAAGATTTTTGAGAATTTTTCCTCTCCATGAAACAACTGGAACTTCTGGCCTCCTAAGATTCCTAACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCGTCCTATTTTTGCTTGCCGCTCATATTGTTGGATCATCTTGGTACTTGTTCTCCATCGAACGTGAAGTTAAGTGCTGGGTTGATGCATGCAAGGACAAGCACTGTGATTATGGTCATTTATACTGTGAAAGCTTCAGCCGAGTAACTCAAGAGTTGCTAAATGGCACATGTATTCATAAAAAGGATGATGATAATGATGACCTAAACTTCTTCCACTTTGGTATATTTATAGGTGCCCTTAAGTCAAAAATCGTGGAAACGGATAATTTCCGTCGCAAATTCTTTTACTGTTTTTGGTGGGGTCTCCGTGCTGTTAGTTCTCTTGGTCAAAATCTGGAAACAAGCACTTACATTGGGGAGATTCTCTTTGTGGTTTTCATATCCATATTGGGATTAATTTTATTTTCTTCCCTCATTGGTAATATGCAGAAGTATCTGCAATCATTAACTGTTAAGGTAGAGGAAATGAGAGTGAAGAGACGAGATGCAGAGCACTGGATGTCTCACCGTATGCTTCCTGAGCCCTTGAGGGGACGCATTAGACGCTACGAGCAGTACAAATGGCAGGAAACGAGAGGTGTCCAAGAAGAAGAACTCTTAGGAAACCTTCCTAAAGACCTCAAGCGAGAGATTAAGCGCCATCTCTGTTTGAATTTTCTCATGAAAGTGCCCATGTTTCAAAATATGGACGATCAACTTTTGGATGCAATGTGTGATCATATCAAGCCAGTCTTGTATACAGAAAATAGCACTATAATCCAAGAAGGCGAGCCAGTTGAGTTGATGCTTTTTATCATTAGAGGAAGTATAGTTACCACAATTTCAGATGATGGGAAAACCGGCTTTTCCGAATCCGCTTATTTGAAAGATGGTGACTTTTGTGGTGAAGAGCTTCTTACGTGGGCCTTAGATATTCATTCCTCCCGAACACTCCCCAGCTCGACTAGAACTGTAAAATCGCTAACTGAGGTTGAAGCATTTGCCTTAATGGCTCATGATTGCAAATCTGTCTCTACCCAATACAGACAACGCCATAACCAACTCCAAAAGTTCAGGTTCTACTCTTTCCAGTGGAGAGCATGGGCGGTCCATAAAATACAAATGGCATGGCACCGTTACCAGAAGAGAAAGCTGAACAAGTACTTAATGGGAGGAGAGGCCAGGTTGAAGGATATGGAGAATAGAGTGGACACATCTGCTAATCTTAATGCTGCTGCTTATTCTTCAAAGCTTTCACCTCGGCCACCTCCTTTGCCTCCTCAAAAACCCACTGATCCTGAATCTTGA 2070 41.74 MGSSQNKFARFVHRTPWRSLSSELFLSDTISPRRSRSFLRRFWDCIQTGYERFMRTWLSSQSVDDHKIKRQLEPVSRKKVLDPQGPFLLFWNKIFEFSCVLAAALDSLFFYIPMINSTTRCLTLDKPLQTTACVLRSLIDAFYVLHIIFQFRTGFIAPSSRIFGRGELVDDAWLIAKRYFSTYFMIDILSILPLPQLVILVVVPATKGPVSKVTRDLLTYVIFVQYVPRFLRIFPLHETTGTSGLLRFLTETAWAGAAFNLVLFLLAAHIVGSSWYLFSIEREVKCWVDACKDKHCDYGHLYCESFSRVTQELLNGTCIHKKDDDNDDLNFFHFGIFIGALKSKIVETDNFRRKFFYCFWWGLRAVSSLGQNLETSTYIGEILFVVFISILGLILFSSLIGNMQKYLQSLTVKVEEMRVKRRDAEHWMSHRMLPEPLRGRIRRYEQYKWQETRGVQEEELLGNLPKDLKREIKRHLCLNFLMKVPMFQNMDDQLLDAMCDHIKPVLYTENSTIIQEGEPVELMLFIIRGSIVTTISDDGKTGFSESAYLKDGDFCGEELLTWALDIHSSRTLPSSTRTVKSLTEVEAFALMAHDCKSVSTQYRQRHNQLQKFRFYSFQWRAWAVHKIQMAWHRYQKRKLNKYLMGGEARLKDMENRVDTSANLNAAAYSSKLSPRPPPLPPQKPTDPES 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2478267 2482180 + Conep11aG0049900.1 Cone11ag0487 447739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0487 689 SUPERFAMILY Voltage-gated potassium channels 82 408 - -
Cone11ag0487 689 MobiDBLite consensus disorder prediction 664 689 - -
Cone11ag0487 689 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Cone11ag0487 689 ProSiteProfiles cAMP/cGMP binding motif profile. 486 571 IPR000595 -
Cone11ag0487 689 Pfam Ion transport protein 93 413 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag0487 689 SMART cnmp_10 486 617 IPR000595 -
Cone11ag0487 689 Gene3D - 98 411 - -
Cone11ag0487 689 Gene3D Jelly Rolls 484 604 IPR014710 -
Cone11ag0487 689 SUPERFAMILY cAMP-binding domain-like 415 609 IPR018490 -
Cone11ag0487 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 654 - -
Cone11ag0487 689 MobiDBLite consensus disorder prediction 673 689 - -
Cone11ag0487 689 CDD CAP_ED 486 590 IPR000595 -
Cone11ag0487 689 Gene3D Helix hairpin bin 413 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0487 Cone-Chr11:2478267 Cone14ag0025 Cone-Chr14:203913 1.60E-248 dispersed
Cone11ag0487 Cone-Chr11:2478267 Cone14ag0024 Cone-Chr14:200364 2.78E-147 wgd
Cone11ag0487 Cone-Chr11:2478267 Cone15ag0026 Cone-Chr15:198240 1.11E-26 wgd
Cone11ag0487 Cone-Chr11:2478267 Cone18ag1018 Cone-Chr18:7534518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0487 K05391 - cit:127898699 724.931