Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0496 ATGAAGGTGGAGTTAGGTTTGGGCGGAGGGGAGTGGAACGATGAGGATAAGACTATGCTTTCTGTAGTTCTCGGCACTAAAGCTTTCAATTACTTGCTTTCGAGCTCTGTCTCGAACGAGAATCTGTTAATGGCAGTAGGCAGTGATGAGAATCTTCAAGACAAGCTTTCCGATCTAGTAGACCGCCCTAACTCATCGAATTTCAACTGGAACTACTCCATTTTCTGGCAGATTTCTCGCTCCAAATCCGGGGATTTCATTCTAGGCTGGGGAGATGGATCCTGTAGAGAGCCTCGAGCTGGAGAAGAATCGGAAACTAATCGTTTTCTCAATTTCCGGCTTGAAGATGAGAATCAACAGAGGATGAGGAAAAGAGCTCTTCAGAAACTTCATACATTCTTTGGGGGCTCAGATGAGGATAATTATGCCCTAGGGTTAGATAGAGTTACTGATACAGAAATGTTCTTCCTTGCTTCCATGTGTTTCTCTTTCGCTAGAGGGGAAGGTGGGCCCGGAAAATGCTTATTGTCTGGAAAACATTTTTGGTTTACGGATTTGCTCAAATCGCCAGGTGATTATTGTGTAAGATCATTTCTCGCTAAATCTGCTGGAATTCAGACTGTTGTTTTAGTACCTACTGATATTGGTGTAGTTGAATTAGGTTCAGTTAGATCCGTTTCTGAAAGCTTAGAATTGGTTCAATCGATTAGATCTTTATTTTCGTCAAATTCCTCATCACTTGATCGATCGAAGCTGTTTACTAGCTTGCCCTTAGTGAGCGAAAAGAGAGATGACAATTACCATTTTCCCGGATTGGTGGGTGGAGAGAGAGGAGGAGGGGACGAGATAATTGTTCCAAAGATTTTCGGGCAGGATTTGAATTCAGGCAATTTGGTCCGGTCCAATTTCCGGGAGAAGCTTGCTGTTAGGAAAATGGAAGATAGGTCATGGGAAGGTTATGCGAATGGAGAAGGTAGAGGGGTTTCTCCCTTTCCGAGCCCACAGAATGGGCTTCATGGGTCGGGTTGGGTGGCCCATCATCATGTTCATGGTCCGAGACAGGGGAATGTAACACAAGAACTAGTGAATGGAAACAATAATAACAATAATGTTAGGGAAGAATTTCTGCTCAATCATTACCCACCTCAAAAGCAACAAACTCAAATGCAAATCGATTTTTCAGGTGCAACTTCTAGACCATCTATGATTACAAGGGTGGTAAATGCAGAATCTGAGCATTCTGATATTGAAGCTTCATGTAAGGAAGAAATGTCCGGTCCGGTAAATGAAAGAAGGCCGAGAAAACGTGGAAGAAAACCGGCAAATGGGAGGGAGGAGCCGCTTAATCATGTTGAAGCAGAGAGACAGAGACGGGAGAAATTGAACCAGAGGTTCTACGCCTTAAGAGCGGTTGTGCCCAACATTTCCAAAATGGACAAAGCTTCATTGTTAGGAGATGCAATTTCTTACATCAATGAGCTGCAAGAAAAGCTCAGGGTCATGGAAGAAGAACAACAGAGGGGGGGTGGTAATTCAGGGAGCAGCTCAAAAGACGCGATGGCATCATTACCTGAAGTTGATGTTCAAGCCGTTCGTGATGAAGTTATTGTTAGGGTAACTTGCTCTCTTGATTCACACCCGGTTTCAAAACTGATTAAGGCGTTTAAAGATGCGAAAGTAAGTGTTGTAGAATCTAAACTAAGTACAGGAAATGATACTGTGTTTCATACTTTTGTTGTTAAGTCTCATCATGGGTCAGAACATCTAACAAAGGAAAAGCTGATCGCAACATTCTCTGGGGAATCAAGCTCGTTGCAGCCATTGTAA 1827 43.19 MKVELGLGGGEWNDEDKTMLSVVLGTKAFNYLLSSSVSNENLLMAVGSDENLQDKLSDLVDRPNSSNFNWNYSIFWQISRSKSGDFILGWGDGSCREPRAGEESETNRFLNFRLEDENQQRMRKRALQKLHTFFGGSDEDNYALGLDRVTDTEMFFLASMCFSFARGEGGPGKCLLSGKHFWFTDLLKSPGDYCVRSFLAKSAGIQTVVLVPTDIGVVELGSVRSVSESLELVQSIRSLFSSNSSSLDRSKLFTSLPLVSEKRDDNYHFPGLVGGERGGGDEIIVPKIFGQDLNSGNLVRSNFREKLAVRKMEDRSWEGYANGEGRGVSPFPSPQNGLHGSGWVAHHHVHGPRQGNVTQELVNGNNNNNNVREEFLLNHYPPQKQQTQMQIDFSGATSRPSMITRVVNAESEHSDIEASCKEEMSGPVNERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQEKLRVMEEEQQRGGGNSGSSSKDAMASLPEVDVQAVRDEVIVRVTCSLDSHPVSKLIKAFKDAKVSVVESKLSTGNDTVFHTFVVKSHHGSEHLTKEKLIATFSGESSSLQPL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2544288 2546812 - Conep11aG0051000.1 Cone11ag0496 447748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0496 608 MobiDBLite consensus disorder prediction 502 521 - -
Cone11ag0496 608 Pfam Helix-loop-helix DNA-binding domain 449 495 IPR011598 GO:0046983(InterPro)
Cone11ag0496 608 FunFam Transcription factor bHLH13 438 510 - -
Cone11ag0496 608 Gene3D - 439 508 IPR036638 GO:0046983(InterPro)
Cone11ag0496 608 CDD bHLH_AtAIB_like 442 507 - -
Cone11ag0496 608 MobiDBLite consensus disorder prediction 412 431 - -
Cone11ag0496 608 Coils Coil 484 504 - -
Cone11ag0496 608 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cone11ag0496 608 MobiDBLite consensus disorder prediction 412 456 - -
Cone11ag0496 608 PANTHER MYC 41 600 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cone11ag0496 608 SMART finulus 451 500 IPR011598 GO:0046983(InterPro)
Cone11ag0496 608 MobiDBLite consensus disorder prediction 439 456 - -
Cone11ag0496 608 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 507 IPR036638 GO:0046983(InterPro)
Cone11ag0496 608 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 445 494 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0496 Cone-Chr11:2544288 Cone12ag0465 Cone-Chr12:2953872 2.62E-61 dispersed
Cone11ag0496 Cone-Chr11:2544288 Cone18ag1010 Cone-Chr18:7488601 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44315 PF03371 PRP38 1.10E-50 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0496 - - - 0.0