Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0527 ATGAAATCAGGAGAAAGATCAGGATTACTTCATGATAATAACAATGATCATGAGCTACAATTACAATCTTTCTCGAATATTGCAACACAAGCAATTCACGAACTGACCGGTTCTGTTCAATTTGAAGATATTAATCCGGTTTTGAGCTTCTTTTCATCCAACAATGGAGCCGGAAACAGTACCACCGATCATTGCAGCGACGTCGCAATCAGTAAACCATCTTGGGATTCTAATGAGCAGGTGGGAAGATTGGATCCGAAGGGTGTTGATGATGAGAAGTGCAATGGGAATATTAGTGATGGAAATAATTCATGGAGGAGATCTAGCTCAAGTACTATTAGTTCAGAAAAGAGCAATAAGGTGAAAGTGAGGAGGAAGCTGAGAGCGCCAAGGTTTTGCTTTCAGACAAGAAGTGATGTTGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCTAGATATTCTTCAACTCATGATTTTGATCATTTAGATGTATACATGTATACTGCACGTAGGAGTTACTATCGTTGTACACAAAGCAACTGTCGAGTGAAGAAGAGGATTGAAAGATTGTCTGAAGATTGTCGAATGGTGCTAACAACATATGAAGGAAGACATAACCATTCTCCTTTTGAGGACTCAAATTCATCCGAGCCTGATTGCATTTCCTCCTTCTGA 711 39.52 MKSGERSGLLHDNNNDHELQLQSFSNIATQAIHELTGSVQFEDINPVLSFFSSNNGAGNSTTDHCSDVAISKPSWDSNEQVGRLDPKGVDDEKCNGNISDGNNSWRRSSSSTISSEKSNKVKVRRKLRAPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRYSSTHDFDHLDVYMYTARRSYYRCTQSNCRVKKRIERLSEDCRMVLTTYEGRHNHSPFEDSNSSEPDCISSF 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2860831 2862868 - Conep11aG0054300.1 Cone11ag0527 447779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0527 236 MobiDBLite consensus disorder prediction 71 118 - -
Cone11ag0527 236 Gene3D WRKY domain 128 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0527 236 Pfam WRKY DNA -binding domain 144 165 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0527 236 Pfam WRKY DNA -binding domain 181 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0527 236 ProSiteProfiles WRKY domain profile. 138 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0527 236 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 224 IPR044810 GO:0003700(InterPro)
Cone11ag0527 236 MobiDBLite consensus disorder prediction 96 117 - -
Cone11ag0527 236 SUPERFAMILY WRKY DNA-binding domain 135 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0527 236 SMART WRKY_cls 143 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0527 Cone-Chr11:2860831 Cone9ag1265 Cone-Chr9:9395529 8.55E-43 dispersed
Cone11ag0527 Cone-Chr11:2860831 Cone14ag0482 Cone-Chr14:2345784 1.14E-37 wgd
Cone11ag0527 Cone-Chr11:2860831 Cone15ag0511 Cone-Chr15:2482764 4.20E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44321 PF00076 RRM_1 6.10E-13 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0527 - - - 0.0