Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0540 ATGGAGATGATTCCGGAATCAAAAACACTTCCAATGAAATTCCACATGGAGCGGGTCCCAGATTCAATTGTTCGAACAACCTCACCAAGAGAAGCAGGTCATGTTTCAAATGCTCGATCAGCTATGGTAAGGGAAGAAATCAGAATATTGGATGCCAGGGACTCTCAAGAGTTAGACTCTCCTTTTCCTACAAGATTTTGGAAAGGAAAGGCCTCTTTGCCAGAGCATGAAAAGCTCATGGATGAAGTTACAATTAAGAGCAATGATGATTCAAATGATGAAGGCGGTCCAAGTTCTTTCTCGGGAGCTAGCCATCCTCCTGAACCCATTAATTCAGATCCCATGAGAACTGTCTATGTACCATTACATCAGAAAAAAACAGATGCTGGATGTCTCTTGAAGAGCTTGTCTATGAAGGGTACTTTTCTTGAAGATCTTTTGATCCAGGTCCCAACAAAGAAACCAATCCCGACTATTATTTCCACAACAGAAAGTTTTGTTGAAGAACCTAATGACTTGTGTGCATTGTCCTCTCCGTTTTTTGTTTCGCGTGCATCTCAGAATACAGAGAGCTCTCTCCTTCATCCAGATTCTGAAGAAAAGGAATGCATCTGGGATACTTCTTTGCCTCCAAGTGGAAATGTAAGTCCACATAGTAGTATAGACAGCATAGGTGTTGCTACAGCCATGAGCATTGTTAATAGCTGTGCTAGTACATATAGGAGTGAGGTGATCACTAGTGATGGAATACTTAGCGTGGGAAGGAACTGTGAGAGTACAAAAGAAAGTGTAAGTGTTAGAGGGGACTATTCAATGGAGAGTGCAAAGACAAGTATGAGCCGAGCAAGTGATAGTAGTGGTATTAGTGTTGAGAGTAGTTGGAGCAACTTGACTGGAAGTGCCAATAAGCCTCACAAAGGGAACGATCCTAGGTGGAAGGCCATCCTTGCTATACGATCAAGAGATGGGATTCTAGGAATGAGTCAATTTAGATTGCTCAGAAGGCTCGGGTGTGGTGACATTGGTAGTGTTTATCTCTCGGAATTGAGTGGTACCCGCTGTTATTTCGCTATGAAAGTGATGGACAAGGCATCCCTTGCTAGTAGGAAGAAGTTGACTAGAGCCCAGACAGAAAGAGAGATTCTTCAGTTGCTGGACCATCCTTTTCTACCCACTTTATATACCCATTTTGAGACTGATAGATTTTCATGTTTAGTCATGGAGTATTGTCCAGGAGGTGATCTTCATGCTTTGAGACAACGTCAACCGGGCAGACATTTTTCAGAGTATGCTGCACGGTTTTATGCAGCAGAGGTTCTATTGGCACTTGAATATCTTCATATGCTGGGAGTTGTCTACAGAGACTTGAAACCCGAAAATGTTCTGGTCCGTGATGATGGTCACATAATGCTCTCCGACTTTGACCTTTCCTTTAGATGTGCAGTTTCGCCTACCCTCATAAAATCCTCTTCATTCGATTTTGATCCTTCAAAACGAGCTTCTAATGGCTCATTTTGTGTCCAGCCTACTTGTAATGAGCCCACATCATCATGCATCCAGCCTGCTTGCTTTCTCCCACGTTTCTTCCCTCAAAAGAGCAATAAGAAGAATCGAAAACCACAAACCGAACCCACATTACCATTCAGTACACTCCCTGAGCTTGTCGCAGAGCCCACTGCAGCCCGGTCCATGTCATTTGTTGGGACCCACGAATATTTAGCTCCCGAAATCATCAAAAAAGAAGGCCATGGAAGTGCTGTTGATTGGTGGACATTTGGCATTTTCTTGCATGAACTCTTATATGGTAAAACCCCATTCAAAGGGTCTGGAAACACAGCTACAATGTTCAATGTGGTGGGCCAGCAGTTGAGATTCCCTGAATCTCCAGGAACTAGTAATGCCAGCCGGGATCTCATCAGGGGTTTGCTTGTAAAGGAGCCACAGCATAGGCTTGGGGTGAAGAGGGGTGCAACTGAGATTAAGCAGCACCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATAAGGTGCAGCACTCCACCTGACGTGCCTAGACCAGTAGAGACCGAGGTTCTGCCCGGGAAGTTCGGGCAGGTTGGCATGGTAGGGGTGGGCAGTAGCAGTAAGAGGATGGTAGGGACTGACATGATGAAATCTGGGGGTAAATATCTCGACTTTGAGTTCTTTTAA 2187 44.44 MEMIPESKTLPMKFHMERVPDSIVRTTSPREAGHVSNARSAMVREEIRILDARDSQELDSPFPTRFWKGKASLPEHEKLMDEVTIKSNDDSNDEGGPSSFSGASHPPEPINSDPMRTVYVPLHQKKTDAGCLLKSLSMKGTFLEDLLIQVPTKKPIPTIISTTESFVEEPNDLCALSSPFFVSRASQNTESSLLHPDSEEKECIWDTSLPPSGNVSPHSSIDSIGVATAMSIVNSCASTYRSEVITSDGILSVGRNCESTKESVSVRGDYSMESAKTSMSRASDSSGISVESSWSNLTGSANKPHKGNDPRWKAILAIRSRDGILGMSQFRLLRRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHALRQRQPGRHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSFRCAVSPTLIKSSSFDFDPSKRASNGSFCVQPTCNEPTSSCIQPACFLPRFFPQKSNKKNRKPQTEPTLPFSTLPELVAEPTAARSMSFVGTHEYLAPEIIKKEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNTATMFNVVGQQLRFPESPGTSNASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPDVPRPVETEVLPGKFGQVGMVGVGSSSKRMVGTDMMKSGGKYLDFEFF 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3027379 3030367 + Conep11aG0055600.1 Cone11ag0540 447792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0540 728 MobiDBLite consensus disorder prediction 86 115 - -
Cone11ag0540 728 Gene3D Phosphorylase Kinase; domain 1 328 413 - -
Cone11ag0540 728 PANTHER FLIPPASE KINASE 1-RELATED 195 688 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone11ag0540 728 FunFam Serine/threonine-protein kinase D6PK-like 328 413 - -
Cone11ag0540 728 SUPERFAMILY Protein kinase-like (PK-like) 312 688 IPR011009 -
Cone11ag0540 728 FunFam serine/threonine-protein kinase D6PK-like 414 481 - -
Cone11ag0540 728 ProSiteProfiles Protein kinase domain profile. 330 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0540 728 SMART serkin_6 330 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0540 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0540 728 FunFam serine/threonine-protein kinase D6PK-like 561 684 - -
Cone11ag0540 728 Pfam Protein kinase domain 331 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0540 728 Pfam Protein kinase domain 563 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0540 728 CDD STKc_phototropin_like 328 685 - -
Cone11ag0540 728 Gene3D Transferase(Phosphotransferase) domain 1 562 683 - -
Cone11ag0540 728 Gene3D Transferase(Phosphotransferase) domain 1 414 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0540 Cone-Chr11:3027379 Cone5ag1793 Cone-Chr5:12725115 9.12E-222 dispersed
Cone11ag0540 Cone-Chr11:3027379 Cone14ag0490 Cone-Chr14:2403091 0 wgd
Cone11ag0540 Cone-Chr11:3027379 Cone15ag0519 Cone-Chr15:2535127 3.77e-313 wgd
Cone11ag0540 Cone-Chr11:3027379 Cone18ag0964 Cone-Chr18:7023430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81885 PF10602 RPN7 9.30E-52 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0540 - - - 0.0