Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag0552 | ATGGGGGAGAAAGATGATGGGTTGGGGTTGGGATTGAGTTTGAGGCTGGGATGTGAAGGCGAAACGAGGTCGCTTGAGCCTTCGTTGCAGTTGGGTAATTATCATATGCGGAGGCCTTCGCAGCAGCATCCCATGCAGATGCTTAATCCTCACCACAGGATCACATCTTGGAATGAAATGATCTTTCAGTCGTCCGGTACTAATAGAATTAACTGTCCGGCCGAAACGAGGTCTTTTTTGGGAATCAGTGTGAATAGGAGTCCAGTAGTAGTAGTAGACCTCGACCAGGAAGATCAGCAAAACGGCGCCGTGTCGTCGCCGAATAGCACTGTATCGAGCATTAGCGGGAAGAGGAGTGAGAGAGAGGCGGCGGCGGGTGGTTGTGGGGAGGAGACGGAGGCGGAGCGGGCTTCATGCTCGCGAGGGAGTGATGAAGAGGATGGAAGCGGTGGCGCTGACTGCGACGAAGCGGCGAGGAAGAAGCTGAGGTTGTCAAAGGATCAGGCTTTGGTGCTTGAAGAGACTTTCAAAGAGCACAACACTCTTAATCCGAAAGAAAAGCTGGCACTGGCTAAGCAGTTGAATCTGAGGCCTAGGCAAGTGGAAGTCTGGTTCCAAAACAGGAGGGCAAGGACCAAGTTGAAGCAAACAGAGGTGGACTGTGAGTACTTGAAACGATGCTGTGAGAATCTGACGCAGGAGAATAGGCGTTTGCAGAAGGAGGTACATGAGCTTAGAGCACTCAAACTTTCCCCACAGCTTTACATGCACATGAACCCTCCGACTACCCTAACCATGTGTCCCCAATGTGAACGCGTTTCATCGTCGTCCTCCTCCTCCACTTCCCCTGCCGCCGCCGCCGCCGCTGCCACTCCCACTCCAGCTCCGGCAAACTCAAATCTTCGGCACCCACTTTCAATCAACCTGTGGGCCACCACAACGATTCAACGTTGA | 954 | 53.04 | MGEKDDGLGLGLSLRLGCEGETRSLEPSLQLGNYHMRRPSQQHPMQMLNPHHRITSWNEMIFQSSGTNRINCPAETRSFLGISVNRSPVVVVDLDQEDQQNGAVSSPNSTVSSISGKRSEREAAAGGCGEETEAERASCSRGSDEEDGSGGADCDEAARKKLRLSKDQALVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVHELRALKLSPQLYMHMNPPTTLTMCPQCERVSSSSSSSTSPAAAAAAATPTPAPANSNLRHPLSINLWATTTIQR | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3091504 | 3093612 | - | Conep11aG0056800.1 | Cone11ag0552 | 447804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag0552 | 317 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 9 | 292 | IPR050762 | - | |
Cone11ag0552 | 317 | SMART | halz | 215 | 258 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0552 | 317 | Pfam | Homeodomain | 159 | 213 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0552 | 317 | MobiDBLite | consensus disorder prediction | 97 | 154 | - | - | |
Cone11ag0552 | 317 | FunFam | Homeobox-leucine zipper protein HAT22 | 163 | 209 | - | - | |
Cone11ag0552 | 317 | Pfam | HD-ZIP protein N terminus | 1 | 122 | IPR006712 | GO:0005634(InterPro) | |
Cone11ag0552 | 317 | Gene3D | - | 163 | 213 | - | - | |
Cone11ag0552 | 317 | ProSiteProfiles | 'Homeobox' domain profile. | 155 | 215 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0552 | 317 | Coils | Coil | 221 | 248 | - | - | |
Cone11ag0552 | 317 | MobiDBLite | consensus disorder prediction | 98 | 117 | - | - | |
Cone11ag0552 | 317 | MobiDBLite | consensus disorder prediction | 270 | 301 | - | - | |
Cone11ag0552 | 317 | Pfam | Homeobox associated leucine zipper | 215 | 249 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0552 | 317 | CDD | homeodomain | 159 | 216 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0552 | 317 | SUPERFAMILY | Homeodomain-like | 147 | 216 | IPR009057 | - | |
Cone11ag0552 | 317 | SMART | HOX_1 | 157 | 219 | IPR001356 | GO:0003677(InterPro) | |
Cone11ag0552 | 317 | MobiDBLite | consensus disorder prediction | 123 | 154 | - | - | |
Cone11ag0552 | 317 | ProSitePatterns | 'Homeobox' domain signature. | 190 | 213 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0552 | Cone-Chr11:3091504 | Cone17ag0307 | Cone-Chr17:1456852 | 2.79E-60 | dispersed | |
Cone11ag0552 | Cone-Chr11:3091504 | Cone18ag0952 | Cone-Chr18:6943238 | 3.99E-166 | wgd | |
Cone11ag0552 | Cone-Chr11:3091504 | Cone6ag0654 | Cone-Chr6:3299663 | 6.13E-78 | wgd | |
Cone11ag0552 | Cone-Chr11:3091504 | Cone9ag0657 | Cone-Chr9:3125555 | 1.52E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44323 | PF00999 | Na_H_Exchanger | 8.40E-56 | CL0064 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag0552 | K09338 | - | csv:101222132 | 315.079 |