Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0552 ATGGGGGAGAAAGATGATGGGTTGGGGTTGGGATTGAGTTTGAGGCTGGGATGTGAAGGCGAAACGAGGTCGCTTGAGCCTTCGTTGCAGTTGGGTAATTATCATATGCGGAGGCCTTCGCAGCAGCATCCCATGCAGATGCTTAATCCTCACCACAGGATCACATCTTGGAATGAAATGATCTTTCAGTCGTCCGGTACTAATAGAATTAACTGTCCGGCCGAAACGAGGTCTTTTTTGGGAATCAGTGTGAATAGGAGTCCAGTAGTAGTAGTAGACCTCGACCAGGAAGATCAGCAAAACGGCGCCGTGTCGTCGCCGAATAGCACTGTATCGAGCATTAGCGGGAAGAGGAGTGAGAGAGAGGCGGCGGCGGGTGGTTGTGGGGAGGAGACGGAGGCGGAGCGGGCTTCATGCTCGCGAGGGAGTGATGAAGAGGATGGAAGCGGTGGCGCTGACTGCGACGAAGCGGCGAGGAAGAAGCTGAGGTTGTCAAAGGATCAGGCTTTGGTGCTTGAAGAGACTTTCAAAGAGCACAACACTCTTAATCCGAAAGAAAAGCTGGCACTGGCTAAGCAGTTGAATCTGAGGCCTAGGCAAGTGGAAGTCTGGTTCCAAAACAGGAGGGCAAGGACCAAGTTGAAGCAAACAGAGGTGGACTGTGAGTACTTGAAACGATGCTGTGAGAATCTGACGCAGGAGAATAGGCGTTTGCAGAAGGAGGTACATGAGCTTAGAGCACTCAAACTTTCCCCACAGCTTTACATGCACATGAACCCTCCGACTACCCTAACCATGTGTCCCCAATGTGAACGCGTTTCATCGTCGTCCTCCTCCTCCACTTCCCCTGCCGCCGCCGCCGCCGCTGCCACTCCCACTCCAGCTCCGGCAAACTCAAATCTTCGGCACCCACTTTCAATCAACCTGTGGGCCACCACAACGATTCAACGTTGA 954 53.04 MGEKDDGLGLGLSLRLGCEGETRSLEPSLQLGNYHMRRPSQQHPMQMLNPHHRITSWNEMIFQSSGTNRINCPAETRSFLGISVNRSPVVVVDLDQEDQQNGAVSSPNSTVSSISGKRSEREAAAGGCGEETEAERASCSRGSDEEDGSGGADCDEAARKKLRLSKDQALVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVHELRALKLSPQLYMHMNPPTTLTMCPQCERVSSSSSSSTSPAAAAAAATPTPAPANSNLRHPLSINLWATTTIQR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3091504 3093612 - Conep11aG0056800.1 Cone11ag0552 447804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0552 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 292 IPR050762 -
Cone11ag0552 317 SMART halz 215 258 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0552 317 Pfam Homeodomain 159 213 IPR001356 GO:0003677(InterPro)
Cone11ag0552 317 MobiDBLite consensus disorder prediction 97 154 - -
Cone11ag0552 317 FunFam Homeobox-leucine zipper protein HAT22 163 209 - -
Cone11ag0552 317 Pfam HD-ZIP protein N terminus 1 122 IPR006712 GO:0005634(InterPro)
Cone11ag0552 317 Gene3D - 163 213 - -
Cone11ag0552 317 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677(InterPro)
Cone11ag0552 317 Coils Coil 221 248 - -
Cone11ag0552 317 MobiDBLite consensus disorder prediction 98 117 - -
Cone11ag0552 317 MobiDBLite consensus disorder prediction 270 301 - -
Cone11ag0552 317 Pfam Homeobox associated leucine zipper 215 249 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0552 317 CDD homeodomain 159 216 IPR001356 GO:0003677(InterPro)
Cone11ag0552 317 SUPERFAMILY Homeodomain-like 147 216 IPR009057 -
Cone11ag0552 317 SMART HOX_1 157 219 IPR001356 GO:0003677(InterPro)
Cone11ag0552 317 MobiDBLite consensus disorder prediction 123 154 - -
Cone11ag0552 317 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0552 Cone-Chr11:3091504 Cone17ag0307 Cone-Chr17:1456852 2.79E-60 dispersed
Cone11ag0552 Cone-Chr11:3091504 Cone18ag0952 Cone-Chr18:6943238 3.99E-166 wgd
Cone11ag0552 Cone-Chr11:3091504 Cone6ag0654 Cone-Chr6:3299663 6.13E-78 wgd
Cone11ag0552 Cone-Chr11:3091504 Cone9ag0657 Cone-Chr9:3125555 1.52E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44323 PF00999 Na_H_Exchanger 8.40E-56 CL0064 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0552 K09338 - csv:101222132 315.079