Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0575 ATGGCTCCTTTCTACTCAGTTCTCTTCACTATTCTACTACCACTTTTCTCTCTATTCCTCAACCCATGCTTTTGCTTCCACCCCAAGCTCTTTAATCCCTCAAAATATCAGGATGATTCGGGTTGGTCACCCGCCGCTGCAACCTGGTATGGAAGTCCTAATGGTGCCGGAAGTGATGGGGGTGCTTGTGGATATGGGGATGCTGTAGGGCAGTCTCCCTTCAACTCAATGGTTTCAGCAGGAGGGCCTTCGCTATACCAATCAGGGAAAGAATGTGGAGCTTGTTATGAGGTCAAGTGCACAGAAAATGTGGCTTGCTCCGGTAATCCGGTGACTGTGGTTATCACTGATAGTTGCCCTGGGTGTGACCCTAGCTCCGTACACTTTGACTTGAGCGGCACTGCGTTTGGAGCCATGGCTAGCTCTGGCCAGGCCGATCGACTCCGTGATGCTGGTGTCCTGAGAATTCAGCACAGAAGAGTGGAGTGCAACTATCCAGGCAAGACTCTTACATTCCGGGTCGATACCGGGTCCAACCCGAACTATTTTGCTGCCCTAGTCGAGTACGAAGGTGGAGATGGAGACCTCGCTTCAGTAGAGCTGAAACAAGCAGGTGATTCAGACCAATCATGGCTTCCCATGCAACAATCTTGGGGGGCTGTTTGGAAACTTAATTCCGGCTCAACATTAAAAGCTCCCTTCTCTATCCGCCTCACTGAGCTCGAATCCGGCAAGACCATTGTAGCTAACAATGTCATTCCCCAAGATTGGAGCCCTGGTCAAGTTTACAGATCCACCATTCAATTTTAG 810 50.12 MAPFYSVLFTILLPLFSLFLNPCFCFHPKLFNPSKYQDDSGWSPAAATWYGSPNGAGSDGGACGYGDAVGQSPFNSMVSAGGPSLYQSGKECGACYEVKCTENVACSGNPVTVVITDSCPGCDPSSVHFDLSGTAFGAMASSGQADRLRDAGVLRIQHRRVECNYPGKTLTFRVDTGSNPNYFAALVEYEGGDGDLASVELKQAGDSDQSWLPMQQSWGAVWKLNSGSTLKAPFSIRLTELESGKTIVANNVIPQDWSPGQVYRSTIQF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3310570 3312213 + Conep11aG0059100.1 Cone11ag0575 447827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0575 269 SMART dpbb_1 78 158 IPR007112 -
Cone11ag0575 269 PANTHER EXPANSIN-B3 17 269 - -
Cone11ag0575 269 SUPERFAMILY PHL pollen allergen 168 265 IPR036749 -
Cone11ag0575 269 CDD DPBB_EXPB_N 42 163 - -
Cone11ag0575 269 Pfam Expansin C-terminal domain 171 254 IPR007117 -
Cone11ag0575 269 Pfam Lytic transglycolase 79 157 IPR009009 -
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Cone11ag0575 269 Gene3D - 30 164 IPR036908 -
Cone11ag0575 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Cone11ag0575 269 SUPERFAMILY Barwin-like endoglucanases 39 167 IPR036908 -
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone11ag0575 269 Gene3D - 165 269 IPR036749 -
Cone11ag0575 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 265 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0575 Cone-Chr11:3310570 Cone3ag1410 Cone-Chr3:32948120 6.17E-77 dispersed
Cone11ag0575 Cone-Chr11:3310570 Cone14ag0518 Cone-Chr14:2595107 3.87E-126 wgd
Cone11ag0575 Cone-Chr11:3310570 Cone15ag0545 Cone-Chr15:2711301 5.30E-126 wgd
Cone11ag0575 Cone-Chr11:3310570 Cone18ag0928 Cone-Chr18:6698060 5.89E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0575 - - - 0.0