Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0593 ATGGAAAGGGAGAGATTCTTAACAAATAATATGAACTGGAACTACTCAAATTTCGGGGTGGAAATCCAGTCGAATGATTTAAACAACAATAATTCCTGCATTTTCAATCCGAATTGGGATAATTCAATGGATCAGAGCGATCCCTTTGAATCCGCCTTAAGCTCCATCGTCTCTTCTCCAGCTGCCTCTAATGGTGGCGGCGGACCCACCACTACCACAGCCATCACCTCCACCACACCCATCACCGGAGACAACATAATGATCAGAGAACTCATCGGAAGACTAGGAAGCATTTGCAATTCCGGTGAGATTTCCCCTCAACCTTACATTCCAGGAAATAATAGCACTAACACTTCATGCTATAACACTCCGTTAAATTCACCACCTAAGCTCAACCTATCGATGATGGATCCACAAATGAGACCAAGCCTTCCACTTTCTGGGACCCACTTGGCCCCTTTTCCGGCCGATCCTGGTTTCGCAGAGAGAGCGGCGAGATTTTCCTGTTTTGGGACAAGAAATGTTGGACAGTTTGGTCTGGTTGAAACTGAGTTGGGTTGTTATAACAACAGATCAATGCCTAAATCTGAATCGGGCAAGCTGTCTAGGGTTTCTAGTAATCAGTCGTTTAGATTTGCTAACGGGACTGGATCTCAAATGGGCAATTCAGAAAGCAATGCAAAGGGAGAGGAAAATGGAGTAGAATTGAATGATTCAAGGGAAGGTTCCTCTGTTTCTGAGCAGGTCACTTTTGGTGAATTGAATATCAAAACTGAACCTGTTCCTCCTGCTGCTGCTTGTAATAACAGGAAGAGGAAGACTATTACAAAGGGGAAGAAGGGTAAAGAAGCTGCAACAAATCCTAAAGATGTTAAGGCAGGGGTGGAGAGCGATGAATTGAAAGCGAAGAGGAGCAAACATGAGGAGGCAAATGGGACTGGAAAGGGTAGTGAAAAGGGCGAGGAGTGTTGTGACGGTGAGAATAAAAATGGAGGGGAAGGGAATAACAATCAGAAGACTTGTAATAATAAGGATAATTTGAAGCCGCCAGAGCCTCCTAAAGATTATATTCATGTTCGGGCCAGAAGAGGTCAGGCGACAGATAGCCATAGCTTGGCTGAAAGAGTTCGAAGAGAGAAGATTAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTTCCTGGTTGCAATAAGGTAATTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTGCAGTCATTACAGCGCCAAGTTGAGTTTCTATCAATGAAACTGGCTACTGTTAATCCAAGGATGGATTTTAACATGGAGGCTCTTCTTCCCAAAGAGGTCTTTCAACCTCGTGGATCTTTACCGCAAACTATTTACCCTTTAGATTCGTCTATCCCCGGATTTTCAAACTACCCGGCCCTCCAATTGCCTTCTCCACAACTACACAATAATGGAACTTCTACTGGAAATGAGAATCAATTCCCCGGAAATCCGGCAATGAGCGATACTCTAAGACAGAACTTGAGTATGCACGGCCCTCCTGCCATTGATGGATTTTCTGAAGCTGTGCCTCCGCAAGTTTCATCCTTCTGGGAAGATGATCTTCAAAGTGTAGTTCAGATGGGTTATGGACCCAATTAG 1635 43.98 MERERFLTNNMNWNYSNFGVEIQSNDLNNNNSCIFNPNWDNSMDQSDPFESALSSIVSSPAASNGGGGPTTTTAITSTTPITGDNIMIRELIGRLGSICNSGEISPQPYIPGNNSTNTSCYNTPLNSPPKLNLSMMDPQMRPSLPLSGTHLAPFPADPGFAERAARFSCFGTRNVGQFGLVETELGCYNNRSMPKSESGKLSRVSSNQSFRFANGTGSQMGNSESNAKGEENGVELNDSREGSSVSEQVTFGELNIKTEPVPPAAACNNRKRKTITKGKKGKEAATNPKDVKAGVESDELKAKRSKHEEANGTGKGSEKGEECCDGENKNGGEGNNNQKTCNNKDNLKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVIGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLPKEVFQPRGSLPQTIYPLDSSIPGFSNYPALQLPSPQLHNNGTSTGNENQFPGNPAMSDTLRQNLSMHGPPAIDGFSEAVPPQVSSFWEDDLQSVVQMGYGPN 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3602668 3605719 + Conep11aG0060900.1 Cone11ag0593 447845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0593 544 SMART finulus 371 421 IPR011598 GO:0046983(InterPro)
Cone11ag0593 544 MobiDBLite consensus disorder prediction 238 253 - -
Cone11ag0593 544 FunFam Basic helix-loop-helix transcription factor 362 435 - -
Cone11ag0593 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983(InterPro)
Cone11ag0593 544 Gene3D - 362 435 IPR036638 GO:0046983(InterPro)
Cone11ag0593 544 MobiDBLite consensus disorder prediction 330 345 - -
Cone11ag0593 544 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 493 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone11ag0593 544 Pfam Helix-loop-helix DNA-binding domain 369 416 IPR011598 GO:0046983(InterPro)
Cone11ag0593 544 MobiDBLite consensus disorder prediction 57 78 - -
Cone11ag0593 544 CDD bHLH_AtBPE_like 355 440 - -
Cone11ag0593 544 MobiDBLite consensus disorder prediction 279 328 - -
Cone11ag0593 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 435 IPR036638 GO:0046983(InterPro)
Cone11ag0593 544 MobiDBLite consensus disorder prediction 211 355 - -
Cone11ag0593 544 MobiDBLite consensus disorder prediction 211 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0593 Cone-Chr11:3602668 Cone17ag0663 Cone-Chr17:4075955 1.13E-68 dispersed
Cone11ag0593 Cone-Chr11:3602668 Cone18ag0913 Cone-Chr18:6505353 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44329 PF05633 BPS1 2.50E-05 CL0133 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0593 - - - 0.0