Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0596 ATGGCGGAGATGGCGAGTTCAGATCCTGAAGGAATCGATGGAGTTCGCATGACCTGGAACGTTTGGCCACGCACCAAGGTAGAAGCCAGCAAGTGCGTGATCCCACTCGCCGTTTCGATTTCTCCGATCCACTCTCATCCTGACATCCCCACGCTCCCTTACGTGCCTCTCCCATGCAAGACTTGCACCGCCGTTCTCAATCCCCTTTCCCGCGTCGGCTTCATCGCCAAGATCTGGATCTGTCACTTCTGCTACCAGCGTAACCATTTTCCCCCTCATTACGGCATGATTTCCGAGACAAATTTTCCCGGCGAGCTCTACCCGCAATACACCACAGTTCAATACTCTCTGCCCCAATCCACTAACCCTAACCTGGACTCTTCTCATCTCTCGTCGGTTTTTGTTTTTGTGCTCGATACCTGCATGATAGAAGAGGAGTTTGCGTTTGCGAAATCAGCGCTTAAAAGAGCGATAGGGTTGTTACCTGACAATGCGCTTGTTGGATTTGTTTCGTTTGGGACCCAAGTTCACGTCCATGAATTGGGATTCTCTGATATGTCCAAGGAGCTTTGGTTTGCGAAACCAAGGAGCTTTGGTTTGTTGGGATTCTCTGGATTTGTTGGAATGTGTTTCAGGGCACTAAGGAGAAGATGTTGGAACAATTGTGATTTTCCGTTCTTGGCCGCAAAGCCACCATCGTACCGTACCAAAATGGAGTGCAGAATGGTTTCCCAGATTCCGGCGAAAAACGGTTTTTACTCCCAGCTTCTGATTCTATTGGATGAATTGCAAACGGATCAGTGGCCTGTTCCACCAGGTAATAGGGCTTCTAGGTGCACTGGAGTGGCATTGAGTGTTGCAGCCGGGTTGCTTGGTGCATGTTTACCTGGAACTGGGGCTCGGATTGTAGCTTTGGTTGTTGGTCCATGCACGGAAGGGCCTGGCACGATTGTATCAAAAGATCTATCAGAGCCGGTGCGTTCTCATAAGGATCTTGATAAGGATGCTGCCCCTTACTTTAAAAAAGCAGTCAAATTTTATGAAACTATGGCAAACTGTCTTGTTAGCCAAGGTCAGGTCCTGGACCTCTTTGCATCCGCACTTGATCAGGTTGGTGTTGCAGAAATGAAAGTTGTGGTTGAAAAAACAGGTGGGCTTGTTGTTCTAGCTGAAAGTTTTGGCCATTCTGTATTTAAGGACTCTTTCAAGCGTATATTTGAAGAGGGAGAACAGTCGCTTGGCCTTTGCTTTAATGACACTCTAGAGGTCAATTGTTCACAGGACATTAAAATTCAGGGAATAATTGGACCTTGCTCATCTTTGGAGAAGAAAGGTCCTTCTGTTGCCGATACCGCCATTGGGGAGGGCAATACAACTGCATGGAAGATGTGTGGCCTAGACAAGAGCACTTGCTTGACTGTGTTTTTTGATCCTTCATCGAGTGACAAGTCAAATGTTCCTGGACCTCCGAATCCACAGTTGTACTTGCAATTTCTTACAAGTTTTCAAAACACCGAAGGCCAACTAATGCTCAGAGTCACAACTGTGACTAGAAGATGGCTAGATACTGCTGTTAACTCGGAGGAATTGATACAAGGATTTGATCAGGAGACAGCTGCTGTTGCAATGGCAAGATTGGCTTCACTGAAAATGCAGATGGAGGAGGGTTTTGATGCCACCCGATGGTTGGATCGCACCCTAATTCGTCTCTGCTCCAATTTCGGGGACTATCGAAAAGATGATCCATCATCCTTTACCTTAAACCCTTGTTTTTCATTGTTCCCTCAATTTCTGTTTAATTTGCGGCGATCACAATTTTTGCAGGTCTTTAACAACAGTCCAGATGAAACTCTGCTTATTTCCGCAACATTGTTAGATGTCACTTCCATCGGAGCTGACAAGATTCTCCTGCTAGATTCTTATTTCAGCATTGTCATATTCCATGGAATGACCATAGCCCAGTGGCGTAACTTGGGATACCAGAACCAGCCAGAGCACCAGGCGTTTGCGCAATTATTACAAGCTCCTCATGGTGAGGCAAAAATAATCATTCACAATCGGTTTCCTGTTCCTCGGTTAGTGGTGTGTGATCAACGTGGCTCGCAGGCTATATTCTTATTGGCCAAGTTGAATCCTTCTGCTACATACAACAATGCTCATGAGATGGGTGCTGGATCCAACGTCATCTTCACTGATGATGTCAGCCTTCAAGTCTTTTTCGAGCATCTCCAAAGGCTGGCCGTGCAATCTTAA 2253 46.43 MAEMASSDPEGIDGVRMTWNVWPRTKVEASKCVIPLAVSISPIHSHPDIPTLPYVPLPCKTCTAVLNPLSRVGFIAKIWICHFCYQRNHFPPHYGMISETNFPGELYPQYTTVQYSLPQSTNPNLDSSHLSSVFVFVLDTCMIEEEFAFAKSALKRAIGLLPDNALVGFVSFGTQVHVHELGFSDMSKELWFAKPRSFGLLGFSGFVGMCFRALRRRCWNNCDFPFLAAKPPSYRTKMECRMVSQIPAKNGFYSQLLILLDELQTDQWPVPPGNRASRCTGVALSVAAGLLGACLPGTGARIVALVVGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPYFKKAVKFYETMANCLVSQGQVLDLFASALDQVGVAEMKVVVEKTGGLVVLAESFGHSVFKDSFKRIFEEGEQSLGLCFNDTLEVNCSQDIKIQGIIGPCSSLEKKGPSVADTAIGEGNTTAWKMCGLDKSTCLTVFFDPSSSDKSNVPGPPNPQLYLQFLTSFQNTEGQLMLRVTTVTRRWLDTAVNSEELIQGFDQETAAVAMARLASLKMQMEEGFDATRWLDRTLIRLCSNFGDYRKDDPSSFTLNPCFSLFPQFLFNLRRSQFLQVFNNSPDETLLISATLLDVTSIGADKILLLDSYFSIVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPHGEAKIIIHNRFPVPRLVVCDQRGSQAIFLLAKLNPSATYNNAHEMGAGSNVIFTDDVSLQVFFEHLQRLAVQS 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3650720 3655740 + Conep11aG0061200.1 Cone11ag0596 447848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0596 750 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cone11ag0596 750 Pfam Sec23/Sec24 helical domain 535 619 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone11ag0596 750 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 624 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Cone11ag0596 750 Gene3D von Willebrand factor, type A domain 131 415 IPR036465 -
Cone11ag0596 750 FunFam Protein transport protein SEC23 53 112 - -
Cone11ag0596 750 SUPERFAMILY Helical domain of Sec23/24 535 626 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone11ag0596 750 FunFam Protein transport protein SEC23 131 416 - -
Cone11ag0596 750 Pfam Gelsolin repeat 624 706 IPR007123 -
Cone11ag0596 750 FunFam Protein transport protein SEC23 609 712 - -
Cone11ag0596 750 Pfam Sec23/Sec24 beta-sandwich domain 417 520 IPR012990 -
Cone11ag0596 750 SUPERFAMILY beta-sandwich domain of Sec23/24 8 534 - -
Cone11ag0596 750 Pfam Sec23/Sec24 trunk domain 132 406 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone11ag0596 750 Gene3D - 10 518 - -
Cone11ag0596 750 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cone11ag0596 750 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 621 749 IPR036180 -
Cone11ag0596 750 Gene3D Severin 623 712 IPR029006 -
Cone11ag0596 750 SUPERFAMILY vWA-like 133 407 IPR036465 -
Cone11ag0596 750 Gene3D Sec23/Sec24 helical domain 532 622 - -
Cone11ag0596 750 Gene3D Sec23/Sec24 helical domain 713 747 - -
Cone11ag0596 750 Gene3D - 53 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0596 K14006 - - csv:101209792 1133.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0596 Cone-Chr11:3650720 Cone14ag0547 Cone-Chr14:2716876 0 dispersed
Cone11ag0596 Cone-Chr11:3650720 Cone18ag0909 Cone-Chr18:6462875 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42