Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0605 ATGTCTCGCCGTGGAGGTGGCCGGGGTGGAAGAACTGATAATCGCCGGGATCAGCCAACAATATCGTCCCCTCAGTCTTCTTCCAGTCGCGGTGGCGGTGGTGGTGGTGGTGGAGAAAGAGGTCGAGGCGGTGGTCGCGGTGAACGCGGCACCGGGAACATTGGTCGTGGTACTGAACCGGTGGCTACAACTCAGTCGGACTATCCACCACTAGTTGCAAAACCATCAGCGTCTCCGGTGGCTGCTTCCACTTCGTCAGCGCCATCTAGGCCGTCTCCGACTGCGGTGTCGAGTCCGGCAGCTAATCCTCAGCAGACACAGAGTTCTGCGGCTCCTGCTCCTGTTGCTGTTGTGTCTACAACAGCCTCGGCGACTGGGACTTCCTTGAGCAGTGAGGTCGAGAAGAAGCTTGTACTTCAGTCGCCTCCTCCATCTTCGTCGAAGGCGCTTCGTTTTCCACAGAGGCCTGGATATGGTACCATCGGCACAAAAATTCTTGTTCGGGCTAATCATTTTCTAGTGGAGATTGCAGACAAGGATCTTCATCAATACGATGTGTCCATGATTCCTGAAGTTACCTCCAAGAAAGTTTGTAGAGATGTGATGAGGGAGCTTTCAGATTTGCATTGTGCATCACACTTGGGTGGGAGAATGTTTGCTTATGACGGTAGGAAGAGTCTCTACACTGCAGGTCCACTGCCTTTTATCTCAAAGGAGTTTGTTCTAAAATTAGGTAACGATGCTGAATCTTCCAGTTCGATCAGGAGAATCCGTGAATACAAAGTGACTATCAAATTTGCCTCTAAGCCAGACCTGCATCATCTACAGCAGTTTATAAGTGGTAGGCAGCTGGATGTGCCTCAAGAGACTATTCAAGTGCTTGACGTAGTTCTTCGAGCATCGCCATCTGAGTTGTACACAGTCATTGGGAGGTCTTTTTTTGCACCTAATTTAGGGCCAAGGGGTGAGTCTGGAAGGGGGGACCTTGGCTATGGTATTGAATATTGGAGGGGATTTTATCAAAGCCTTCGCCCAACCCAGATGGGATTGTCACTTAATGTTGATATCTCTGCAAGGTCTTTCTATGATCCTATTCCAGTGACGGATTTCATTAAAAAACATTTTAATTTTAGAGATACTTCAAGGCCGTTATCAGATCAAGATCGTGTTAAGATCAAGAGGGCCTTGAGAGGAGTTAGGGTGGAAGTTACTCATCAGGGTAATTCAAAAAAATACAAAGTTACCGGAGTGTCGTCCCTACCTTTAAGTCAACTTACGTTCCCTTTAGAGGATGGCTCAAGGATGTCAGTCGTTAAATATTTCCGTGAGAAGTATGGTGTTATGCTTAAAGATGTGGCTCTTCCTGCGCTGCAAGCTGGAAATGACTCAAATCCTGTGTTTTTGCCTATGGAGGTCTGTCGGATAGTTGCTGGACAAAGATATACAAAGAAGTTGAATGAGGCACAGGTAACTGCTCTATTAAGAGCAACTTGTCGGCGACCAGATCTGAGGGAAGAGGACATAAAGCAGATGGTGGAGCGAAGTAAATTCAACGAGGACATGCTTGTAAGTAACGAATTCGGGATTCGAGTGAAGGAACAACTGACTATGGTTGAGGCTCGTGTTTTACCACCTCCTATGCTCAAGTATCATGATTCAGGGAAGGAAGTAAAAGAGAACCCAAGGATGGGTGCATGGAATATGATAAACAAGAGAATGATTAATGGTGGTCAAGTGGAATTCTGGACTTGCATTAATTTCTCTACACGAGTGCATCCAAACATGCCATTTGACTTTTGTGGGCAGTTGGTGGATATGTGCATCAGTAAGGGAATGAATTTCAAACCTGATCCATTGATACCCATACATTCTGTTAACCCTGCTCAAATTGAGAGGGCTCTTAATGAGGTGCACAAGCAATCACAAGCTGAACTTAAAAGGAGGGGGCAGGAGAATAAACGGCTGCAGCTTCTAATTATTATTTTGCCTGATAAAACTGGATCCTATGGAATGATAAAACGAGTGTGCGAAACTGAACTCGGTATCATCTCTCAGTGCTGTCAGCCTAAGGAAGCATCAAAGCTCAAGAAACAGTATTTTGAAAATGTGTCCCTTAAGATCAATGTTAAGGTTGGGGGACGAAACACTGTGTTGAATGATGCTATTAATGGAAGGATGCCTCTTGTGAATGATCGCCCGACAATCATTCTTGGGGCAGATGTAACGCATCCACAACCGGGGGAAGACTCTTGCCCTTCAATAGCCGCGGTAGTTGCTTCCATGGACTGGCCTGAGGTGACCAAGTACAGAGGGATTGTCGCTGCACAAGAGCACCGGCAGGAGATTATTCAAGATCTCTTCAAAACTTTCCGAGATCCTCAAAAGGGAGAAGTTAGTGGAGGCATTGTGAGAGAACTACTAATTGCATTCAGACGATCAACTGGACATAAACCACATAGAATAATATTCTACAGAGACGGTGTAAGTGAAGGACAATTCAGTCAAGTTTTGTTTTATGAAGTGGATGCCATTAGAAAGGCATGTCAATCCCTTGAGGAGGGATATCTTCCTCCTATCACCTTTGTTGTTGTGCAGAAAAGACATCATACTCGTCTCTTTCCAGCTGACCCTAAAAATAAGGACCGTAGTGGCAATATACTACCAGGTACTGTGGTTGAACACAAGATTTGCCATCCTACAGAATTTGACTTCTACCTCAACAGCCATGCAGGCATTCAGGGAACAAGTCGGCCAGCCCATTACCATGTGCTGTATGATGAGAACCGTTTCACTGCTGATGCCTTGCAAACGCTGACAAACAACTTGTGTTACACATATGCAAGGTGCACTCGTGCCGTCTCAATAGTTCCTCCAGCTTATTATGCCCACTTGGCTGCTTTCCGAGCCCGTTACTACATTGAAGGCAATGGCACAGACAGTGGATCCACAGAGGGAGTCAGAAATTTAGAGTTCCGTCCCCTTCCTGCTATTAAGGAGCATATCAAAGATGTGATGTTCTTCTGTTGA 3027 45.92 MSRRGGGRGGRTDNRRDQPTISSPQSSSSRGGGGGGGGERGRGGGRGERGTGNIGRGTEPVATTQSDYPPLVAKPSASPVAASTSSAPSRPSPTAVSSPAANPQQTQSSAAPAPVAVVSTTASATGTSLSSEVEKKLVLQSPPPSSSKALRFPQRPGYGTIGTKILVRANHFLVEIADKDLHQYDVSMIPEVTSKKVCRDVMRELSDLHCASHLGGRMFAYDGRKSLYTAGPLPFISKEFVLKLGNDAESSSSIRRIREYKVTIKFASKPDLHHLQQFISGRQLDVPQETIQVLDVVLRASPSELYTVIGRSFFAPNLGPRGESGRGDLGYGIEYWRGFYQSLRPTQMGLSLNVDISARSFYDPIPVTDFIKKHFNFRDTSRPLSDQDRVKIKRALRGVRVEVTHQGNSKKYKVTGVSSLPLSQLTFPLEDGSRMSVVKYFREKYGVMLKDVALPALQAGNDSNPVFLPMEVCRIVAGQRYTKKLNEAQVTALLRATCRRPDLREEDIKQMVERSKFNEDMLVSNEFGIRVKEQLTMVEARVLPPPMLKYHDSGKEVKENPRMGAWNMINKRMINGGQVEFWTCINFSTRVHPNMPFDFCGQLVDMCISKGMNFKPDPLIPIHSVNPAQIERALNEVHKQSQAELKRRGQENKRLQLLIIILPDKTGSYGMIKRVCETELGIISQCCQPKEASKLKKQYFENVSLKINVKVGGRNTVLNDAINGRMPLVNDRPTIILGADVTHPQPGEDSCPSIAAVVASMDWPEVTKYRGIVAAQEHRQEIIQDLFKTFRDPQKGEVSGGIVRELLIAFRRSTGHKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACQSLEEGYLPPITFVVVQKRHHTRLFPADPKNKDRSGNILPGTVVEHKICHPTEFDFYLNSHAGIQGTSRPAHYHVLYDENRFTADALQTLTNNLCYTYARCTRAVSIVPPAYYAHLAAFRARYYIEGNGTDSGSTEGVRNLEFRPLPAIKEHIKDVMFFC 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3730042 3737038 + Conep11aG0062100.1 Cone11ag0605 447857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0605 1008 Pfam Mid domain of argonaute 560 639 IPR032473 -
Cone11ag0605 1008 Pfam Argonaute linker 1 domain 309 362 IPR014811 -
Cone11ag0605 1008 SUPERFAMILY PAZ domain 361 517 IPR036085 GO:0005515(InterPro)
Cone11ag0605 1008 SMART PAZ_2_a_3 369 497 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone11ag0605 1008 Pfam N-terminal domain of argonaute 163 298 IPR032474 -
Cone11ag0605 1008 ProSiteProfiles PAZ domain profile. 366 477 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 1 15 - -
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 57 71 - -
Cone11ag0605 1008 Gene3D - 725 1008 IPR036397 GO:0003676(InterPro)
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 1 114 - -
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 16 32 - -
Cone11ag0605 1008 Gene3D paz domain 359 481 - -
Cone11ag0605 1008 Pfam Argonaute linker 2 domain 504 550 IPR032472 -
Cone11ag0605 1008 SUPERFAMILY Ribonuclease H-like 652 974 IPR012337 -
Cone11ag0605 1008 FunFam Argonaute 10 542 719 - -
Cone11ag0605 1008 Pfam Piwi domain 658 973 IPR003165 GO:0003676(InterPro)
Cone11ag0605 1008 CDD Piwi_ago-like 525 973 IPR045246 -
Cone11ag0605 1008 Pfam PAZ domain 369 493 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone11ag0605 1008 Gene3D - 542 720 - -
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 78 114 - -
Cone11ag0605 1008 SMART DUF1785_2 307 364 IPR014811 -
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 134 148 - -
Cone11ag0605 1008 MobiDBLite consensus disorder prediction 134 153 - -
Cone11ag0605 1008 CDD PAZ_argonaute_like 364 476 - -
Cone11ag0605 1008 SMART Piwi_a_2 657 974 IPR003165 GO:0003676(InterPro)
Cone11ag0605 1008 ProSiteProfiles Piwi domain profile. 657 974 IPR003165 GO:0003676(InterPro)
Cone11ag0605 1008 FunFam protein argonaute 10-like 725 1008 - -
Cone11ag0605 1008 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 155 974 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0605 Cone-Chr11:3730042 Cone11ag1341 Cone-Chr11:9823795 0 dispersed
Cone18ag0593 Cone-Chr18:2966035 Cone11ag0605 Cone-Chr11:3730042 0 transposed
Cone11ag0605 Cone-Chr11:3730042 Cone18ag0900 Cone-Chr18:6382469 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0605 K11593 - vvi:100258447 1249.19