Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0609 ATGTCCTTTCAACATCAAGAGGTGGATGAATTTAATTACATGGCGGAAGGAGGAGAAGTGGGCAATCTTGCTAATGAAATAGATGATGAAGTTGTGGATGAAAACGAATATGACATGTTTACGAAGGTGACTGATACGTCATCTGCCCAAGCAAGGAAAGGAAAAGACATTCAAGGTATTCCGTGGGATAGATTGCACATAACACGCGAAAAGTATAGGTTGACAAGGCTGGAAGACTATAGGAATTATGAGAATATTCCTTCATCAGGGGAAACTATGGACAAGGAGTGCAAACCAATGGAGAAGGGTGAACATTACTACGATTTTTTCCACAATACCAGATTGGTCAAGCCTACCATCCTTCATTTTCAGCTTAGGAACCTGGTTTGGGCCACTTCTAAACATGATGTCTATTTAATGTCCAACTATTCAGTTATGCACTGGTCATCATTAACTGGAAACTTGTCAGAGATCCTCAACTTTTTAGGGCATGTAGCACCTACTGAGAAATATGCAGGGAGCTTACTGGAAGGCTTCACACAAACTCAGATTAGCACACTAGCAGTGAAGGAAAATTTTTTAGTTGCAGGTGGATTCCAAGGAGAGCTTACTTGTAAGCGTTTGGATAAACAGGGAGTAAGTTTCTGTACTAGAACAACCTATGATGATAATGCCATCACAAACGCCATTGAGATATATGACAGTTCGAGTGGTGGAATACATTTCATGGCATCAAATAATGATTGTGGGTTAAGAGAATATAACATGGAGAGGTTTCAGCTTTTGAATCACATCCGTTTCCCTTGGCCAGTAAATACAATTGCTACTGTATCTGGTCATAGAGACTACTCCTTTGCTTCCGCATGGCACCCTGATGGCCGCACTTTTGCTACGGGAAATCAGGACAAGACATGCAGAGTATGGGACATAAGAAACTTATCATCATCCCTCGCAATACTAAAGAACAACCTGGGTGCTTCTAGGTCCATCCATTACTCATCGGACGGTCAATTTATGGTTGTAGCAGAGCCTGCAGATTTTGTCCATGTCTACAGCACGAAAGGAGATTATAGAAAGCAGCAAGAGATTGATTTCTTTGGCGAGATTTCAGGCATGTCTATGAGCCCAGATGACGAGTCTCTGTATATAGGAATCTGGGACCGGACATATGCTAGCTTGCTTCAGTATAATAGAAGGCGTATGGATATCTTGATTCCTTCTTTTAGTTGGTGGGTTGGTGCTACTAGCTCTTTTGAAAACAGTTTTTAG 1269 41.45 MSFQHQEVDEFNYMAEGGEVGNLANEIDDEVVDENEYDMFTKVTDTSSAQARKGKDIQGIPWDRLHITREKYRLTRLEDYRNYENIPSSGETMDKECKPMEKGEHYYDFFHNTRLVKPTILHFQLRNLVWATSKHDVYLMSNYSVMHWSSLTGNLSEILNFLGHVAPTEKYAGSLLEGFTQTQISTLAVKENFLVAGGFQGELTCKRLDKQGVSFCTRTTYDDNAITNAIEIYDSSSGGIHFMASNNDCGLREYNMERFQLLNHIRFPWPVNTIATVSGHRDYSFASAWHPDGRTFATGNQDKTCRVWDIRNLSSSLAILKNNLGASRSIHYSSDGQFMVVAEPADFVHVYSTKGDYRKQQEIDFFGEISGMSMSPDDESLYIGIWDRTYASLLQYNRRRMDILIPSFSWWVGATSSFENSF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3763079 3767323 + Conep11aG0062500.1 Cone11ag0609 447861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0609 422 SUPERFAMILY WD40 repeat-like 179 389 IPR036322 GO:0005515(InterPro)
Cone11ag0609 422 SMART WD40_4 313 352 IPR001680 GO:0005515(InterPro)
Cone11ag0609 422 SMART WD40_4 270 309 IPR001680 GO:0005515(InterPro)
Cone11ag0609 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 312 - -
Cone11ag0609 422 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515(InterPro)
Cone11ag0609 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515(InterPro)
Cone11ag0609 422 Gene3D - 177 401 IPR015943 GO:0005515(InterPro)
Cone11ag0609 422 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 10 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0609 Cone-Chr11:3763079 Cone14ag1270 Cone-Chr14:10167595 5.50E-196 dispersed
Cone11ag0609 Cone-Chr11:3763079 Cone18ag0895 Cone-Chr18:6332936 2.15E-275 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91