Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0612 ATGCATGAGATGCGTTGCCAAGCACAAAGTCTGAAACTGAGCAGAACTGCAGAGAGAGCGAGAGAGAAAATGAGTGGGAGCAACGCAAACTCGGTGTTTTACGCAGAGGCGTACCATCCGATACAAGCGGGAAGCATCGACGGCACCGACATTCTTCCTCATGATAACGCCGTTTTCCGTGCTCTCCTCTACTCCTCTGCCGGCCTTTATGATCCTCTCGGAGATCCCAAGGTCATCGGAAACCCTTATTGTACTGTCTTCGTTGGTCGCCTCTCCCACCTCACCACTGAGGACACTCTTCGCCAGGCTATGAGCAAGTATGGCCGAATAAAGAACCTGCGTTTGGTCAGGCACATCGTGACTGGTGCGTCAAGAGGGTATGCTTTTGTTGAATTTGAAACCGAAAAGGAGATGCGTCATGCATACAAGGATGCTCACCATTCATTTATTGATGATTGTGAAGTTATAGTTGATTACAATAGACAGCAGCTAATGCCGGGGTGGATTCCAAGAAGGTTAGGAGGGGGTCTTGGTGGTAAGAAGGAATCTGGACAATTGCGTTTTGGAGGACGAGAAAGACCATTTCGAGCTCCCCTGCGTCCAATCCCGCATGTTGAGTTGAAGAGGCTTGGAATCCCACCTCCACCTGAAGGAAGATACATGTCACGCTTCCAGACTCCATCACCTCCAAGAAGCAAAGTGAGCTCCGCTATAAATCGAGAAGGCTATTATTACAAGAGGAGTTCTTCTATGGATGATTGGGAGGAGCACAATAGCAGGAGTAGCCCTCCAAACAAGGGAGAAATGACTCGTAAAAGGTCTGAAGACCACAAAAGGCGGTCTCAAAAACAGAGCTCAAGGAGTGTGGAAAGGAAGGAAGATGGTTCTCATGAGAATAAGAGGTCTGATGAGGCGGGAAGGAGAAGGTACCATAATAGGAGCTCTTTCGAACGAGAAGATCTCTCCCGTAAAAGGAGCAGAAGCTCCAAGGATAAGAGCGGACGATCTAGAAGCGCTAAAGAATAG 1026 48.54 MHEMRCQAQSLKLSRTAERAREKMSGSNANSVFYAEAYHPIQAGSIDGTDILPHDNAVFRALLYSSAGLYDPLGDPKVIGNPYCTVFVGRLSHLTTEDTLRQAMSKYGRIKNLRLVRHIVTGASRGYAFVEFETEKEMRHAYKDAHHSFIDDCEVIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPHVELKRLGIPPPPEGRYMSRFQTPSPPRSKVSSAINREGYYYKRSSSMDDWEEHNSRSSPPNKGEMTRKRSEDHKRRSQKQSSRSVERKEDGSHENKRSDEAGRRRYHNRSSFEREDLSRKRSRSSKDKSGRSRSAKE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3803019 3806056 - Conep11aG0062800.1 Cone11ag0612 447864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0612 341 MobiDBLite consensus disorder prediction 1 21 - -
Cone11ag0612 341 MobiDBLite consensus disorder prediction 246 341 - -
Cone11ag0612 341 MobiDBLite consensus disorder prediction 175 341 - -
Cone11ag0612 341 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 71 192 - -
Cone11ag0612 341 Gene3D - 71 191 IPR012677 -
Cone11ag0612 341 MobiDBLite consensus disorder prediction 185 203 - -
Cone11ag0612 341 SUPERFAMILY RNA-binding domain, RBD 70 190 IPR035979 GO:0003676(InterPro)
Cone11ag0612 341 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 25 314 IPR051183 GO:0000398(PANTHER)|GO:0003729(PANTHER)|GO:0005689(PANTHER)|GO:0017069(PANTHER)|GO:0071011(PANTHER)
Cone11ag0612 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723(InterPro)
Cone11ag0612 341 Pfam RNA recognition motif 86 155 IPR000504 GO:0003723(InterPro)
Cone11ag0612 341 SMART rrm1_1 85 158 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0612 K13155 - - vvi:100261074 403.675
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011247 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 31