Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0617 ATGTCCAGAAGCAGCAGAACAAGATTCTCTCCCATACCCATTCAACCCAAGAGAGAGTCTTTCTCTTCACCCCCATCTCCAGGGTTTGATTACTCGAATGCCCTTTCTCGGTCGGAAGTTCGTGTTCTTAATGCACAAAAGACTAAAGTCGAACCTAATGATAATGCCCTACCATGTTCGCAACCTGATATTGAAGATTTTGCATATAAAAAACCAAATGGATCTAGATCTGAGTCAAGGGATTTAGAGCCTGGCTTGAATGTGCAATCCATGGGGTCTACAGTTTCTGACCCAATAAGACGATCTGGTGAGGCACCGGCCAACTGGGAAACAGTCCTTGAAGGGATTCGCAAGATGAGGTCTTCTGAGGATGCCCCTGTGGACACCATGGGATGTGAGAAAGCTGGCAATGCTTTTCCTCCCAAGGAAAGAAGATTTGCTGTTTTGGCGTCTTCCCTTCTATCTAGCCAGACCAAGGATCACGTCACTCATGGAGCAATTCAACGTCTACATGAAAACAATCTACTTTCAGCCGATGCTATTGACAGAGCCGATGAAGTAACCATAAAAAATTTTATTTATCCGGTTGGGTTTTACACAAGAAAGGCTAGTAATTTGAAGAAAATAGCAAAAATATGTCTTACAAAATATGATGGAGACATACCAACTTCATTAGAGGAGCTACTTCTACTGCCTGGAATAGGTCCTAAGATGGCTCATCTGGTTATGAATGTTGCATGGAACAATGTTCAAGGCATATGTGTAGATACTCATGTACACCGCATTTGCAATCGTCTTGGATGGGTCTTGAGAAAAGGCACCAAACAGAAAACATCTAACCCGGAAGAAACCAGAGAGGCATTGCAACTGTGGCTCCCAAAGGAAGAATGGGTTCCAATTAACCCTCTATTGGTTGGATTTGGACAAACCATCTGTACTCCACTTCGACCAAAATGTGGAGTATGTAGTATAAGAGACTTGTGTCCATCTGCCTTCAAGGATGCTTCAAGTCCTCCATCTAAATCGAAGCGATCAAGTGCGAGCAAGAAGCTGAAAGCAAGCTGA 1065 43.47 MSRSSRTRFSPIPIQPKRESFSSPPSPGFDYSNALSRSEVRVLNAQKTKVEPNDNALPCSQPDIEDFAYKKPNGSRSESRDLEPGLNVQSMGSTVSDPIRRSGEAPANWETVLEGIRKMRSSEDAPVDTMGCEKAGNAFPPKERRFAVLASSLLSSQTKDHVTHGAIQRLHENNLLSADAIDRADEVTIKNFIYPVGFYTRKASNLKKIAKICLTKYDGDIPTSLEELLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVLRKGTKQKTSNPEETREALQLWLPKEEWVPINPLLVGFGQTICTPLRPKCGVCSIRDLCPSAFKDASSPPSKSKRSSASKKLKAS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3848879 3854131 + Conep11aG0063300.1 Cone11ag0617 447869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0617 354 Gene3D Hypothetical protein; domain 2 142 250 - -
Cone11ag0617 354 SMART endo3end 154 310 IPR003265 GO:0006284(InterPro)
Cone11ag0617 354 MobiDBLite consensus disorder prediction 1 33 - -
Cone11ag0617 354 MobiDBLite consensus disorder prediction 80 97 - -
Cone11ag0617 354 FunFam Endonuclease III homolog 244 334 - -
Cone11ag0617 354 Gene3D - 251 328 IPR023170 -
Cone11ag0617 354 SMART ccc3 311 331 IPR003651 GO:0051539(InterPro)
Cone11ag0617 354 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 312 328 IPR004035 -
Cone11ag0617 354 Hamap Endonuclease III-like protein 1 [NTHL1]. 105 334 IPR030841 GO:0003906(InterPro)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006285(InterPro)|GO:0019104(InterPro)
Cone11ag0617 354 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 66 345 - GO:0000703(PANTHER)|GO:0003906(PANTHER)|GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0006296(PANTHER)|GO:0042644(PANTHER)
Cone11ag0617 354 Pfam Helix-hairpin-helix motif 216 244 IPR000445 GO:0003677(InterPro)
Cone11ag0617 354 MobiDBLite consensus disorder prediction 332 354 - -
Cone11ag0617 354 FunFam Endonuclease III-like protein 1 141 245 - -
Cone11ag0617 354 SUPERFAMILY DNA-glycosylase 118 334 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Cone11ag0617 354 Pfam HhH-GPD superfamily base excision DNA repair protein 151 279 IPR003265 GO:0006284(InterPro)
Cone11ag0617 354 ProSitePatterns Endonuclease III family signature. 219 248 IPR004036 -
Cone11ag0617 354 Pfam Iron-sulfur binding domain of endonuclease III 312 328 IPR003651 GO:0051539(InterPro)
Cone11ag0617 354 CDD ENDO3c 146 308 IPR003265 GO:0006284(InterPro)
Cone11ag0617 354 MobiDBLite consensus disorder prediction 45 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0617 K10773 - - vvi:100268015 430.254
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32