Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0618 ATGGGTCTGTTTCTAGACCCCTACGCACAAGTGCTAGGATTAGAAGACCAACATTTGGTCGAACTTATGTGCTCTATACGCAAGGCAGTAGACGTACCAAAAAAAATAAGAACAAGACAAGGAAATCAGCTGTTGGGATTGCTAAGATGCTTGGAAATCCACCTATGCGGAACTCGGATACTCATTCTATTGGTACCAATCTTAGGCGTTCTACCAGAAAAAGGAAGACGCGTCCAACTTATGGAAAGCTCATATGAAAGCTCTGGGGATGAAGATGAAGACTTGATGAGGTCCGCATATCAATCATCGAGGAAACATGTTGATAATAATGGTAATGACGAGGATAGGTCTCCTCCCAAGCATAAAAATACAATGGCTAGATCTACTCCCAGACGCGAAGGTCTGCGACCTCGTGATTCCAGAGTAGTTAGAAGACAACAATTAGATTTAGAATTTGATGATGAAGGCACTTCAGAAGAAAAGGTTGACCATGATGAAACGGAAAATGGGAATGATACTGACAATAATGATGCTGATGATGGCCAAAATGTAGAAGGAGTTGAGGAAGATGAGGGAGAAGAAGATGGTGATGATGAAGAGGAGGAAGAACAGGAAGAAGAGGAGGAGGGACGAAGGCGGTATGATCTTAGGAATCGTGCAGAAGTGCGCAGGCTCTCTATGGAAGAAGGTAAGCCAAGACCAAGGTCTCCTCGCAGGGTATTATATCAAGGAATGGGGACAAAGGTCGGTAGAGATGTACGGAAGGGCGGATCAAGAGTTCATAAAAGTCATCGTTTTTCAAGAGCTGAAGATTCGGATGATTCCCTTCTTGTGGATGAGCTAGACCAAGCTCCTGCTATTCCATGGGGACGAGGTGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGACTTGATGTGCATGGAACAACTGCATGGGGATTGAACGTTGCGGCATCTGGTTGGGGTCATCAGAGTGATGCTTTTGCTTCTTTGGGTTCTGGTATACAGACTGCTGGGCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGAGAGTGTCACATTTGATGATATAGGTGGCCTTTCTGAATATATTGATGCTCTGAAGGAAATGGTTTTTTTCCCATTACTCTATCCTGACTTTTTTGCAAGTTATCATATCACCCCACCAAGGGGGGTGTTGTTATGTGGCCCACCGGGTACTGGAAAGACATTGATTGCTAGAGCGCTAGCATGTGCTGCATCAAAGGCTGGCCAGAAGGTCAGCTTTTACATGCGTAAGGGGGCTGATGTGCTAAGTAAATGGGTTGGTGAGGCTGAAAGACAATTGAAATTACTTTTCGAGGAAGCACAAAGAAATCAACCTTCTATAATTTTCTTTGATGAAATAGATGGACTTGCTCCAGTAAGGTCCAGCAAACAAGAGCAAATTCACAATTCTATTGTTTCCACTTTGCTTGCTTTGATGGATGGTCTCGACTCTTGTGGGCAAGTTGTTTTGATTGGAGCTACCAATCGGATCGATGCAATCGATGGAGCTTTGCGCCGCCCTGGGAGATTTGATCGGGAATTTAATTTTCCTTTGCCTGGTTCCCAGGCACGTGCTGAAATATTGGACATTCACACACGCAAGTGGAAGCATCCTCCTTCAAAGGATCTCAGACTAGAACTTGCAGCTACTTGTGTGGGATATTGTGGTGCTGATTTAAAGGCTTTGTGCACAGAAGCTGCCATTCGTGCTTTTCGCAAAAAATATCCTCAAGTTTACACATGTGATGATAAATTTCTGATAGATGTTGACTCAGTTCATGTTGAAAAAAATCACTTTGTTGAAGCTATGTCAGCAATCACTCCTGCTGCTCATAGAGGCACTGTTGTTCACTCTAGGCCATTGTCTCTGGTTGTTGCACCGTTGCTCCAAAATCATCTCTCAAAATCCATGAATTTCATAGTTGATGTCTTCCCTCCTGTTGCAGTGTCATCAGAGTTGACCAAGCTTTCTTTGCTTTCCTATGGCTCTGCAATTCCTCTTGTGTATCGACCCCGGCTTCTGCTTTGTGGTGGTGAAGGCGTTGGGCTGGATCATCTTGGGCCTGCAATTTTGCATGAACTGGAGAAATTTCCGGTCCATTCTCTAGGACTTCCCTCTCTGCTTTCAGATCCTAGTGCCAAAACACCTGAAGAAGCATTGGTGCATATATTTGGTGAAGCAAGAAGGACAACTCCTTCAATACTCTATTTGTCTCAATTTCATCATTGGTGGGAGACAGCTGATGAACAACTAAGGGCAGTTCTACTGACTTTGTTAGAAGAACTGCCAGCCGATCTACCCATATTACTGCTTGTAACAGCTTCAGCTCCGTTTGCTGAAGTTGATAAAAGAGCTTTGTCAGTGTTTCCTCAACGTTCTATCTATCCGATAGGTCCACCATCTATTGAAGAGAGATCTCTGTTTTTTCACCGATTGATTGAAGCTGCTTTGTCAGTCTTGGTGGAGGTGACTGTGGAAAAGTCTGATGTCTCCCCATCTCTACCTGAACTTCCCAAGGTCCCGAAGGTACCAAGTGGTCCTAAGGTCTCTGAGTTAAAAGCTAAGGTAGAAGCTGAACAGCATGCTCTGTGTCGTTTGCGAATGTGCCTTAGAGATATTTGCAACCGGATTCTGTATGATAAACGATTCACTGTCTTCCATTATCCAGTCTCAGATGAAGATGCTCCAAACTACTGTACAATAATTCAGAACCCTATGGATGTGGCTACCTTATTGCAGCGTGTCGACTCTGGGCAATATGTTATGTGTTTGCCATTCCTCCAAGATGTTGGACTTATTGTTTCCAATGCGAAGGTTTATAATGGAAATGATTACAGCGGCTCTAGGATCGTCAGTAGAGCACACGAGCTTTCTGATGCAGTGCATGGAATGCTGTCACAGATGGACCCTGCACTTGTTGCATTCTGTGACAAAATTGCTGCTCAAGGCGGTCCTCTCATCTTGGAAGATGATTTAGGAGGCCTTACATTCCCATCAACACCCGTTGTAAATTTGGGAACTGTAACTAGGGCCAGTGCTCGACTTCGTAATGTCCAGCCAGAGGTCAATTTGGATCAAAGCTACGAGGCATTAAAACGTCCAAAGAAGAGCGTTGATACTATACAACCTCCAGAAGACATGTCAGTTGCTTGCAATTCCCAGGAACTCGAGGCTGAGAAGACAAATGCCGAGAGGCTGGAAACTTGTGAAGCTACTATTGGCAATGAACATGAACCTTCTGGAGAAGCTTCGGGTACTATTACCGATTTGAACACAACATCATCCCAAGATGTTATAATGTCAGATAGTGAAATCTCTTCCCAAGTGGAGTCTGTTAAAAAGATTTTTGTGAAGCGTGCGGAAAACTATAGTATTCCACAGCTGGAAAGGCTATATAGCCGGATCATGAAAGGAGTTTTTGAAAACAACAAGAAAGACCAGGGAGTAACTGATGAGGTGAACGCTGGGCTATCAATTTTGAAGTTTTTGATGAAATTTGCAGAGGACAAGACAAATTTTTGA 3567 44.15 MGLFLDPYAQVLGLEDQHLVELMCSIRKAVDVPKKIRTRQGNQLLGLLRCLEIHLCGTRILILLVPILGVLPEKGRRVQLMESSYESSGDEDEDLMRSAYQSSRKHVDNNGNDEDRSPPKHKNTMARSTPRREGLRPRDSRVVRRQQLDLEFDDEGTSEEKVDHDETENGNDTDNNDADDGQNVEGVEEDEGEEDGDDEEEEEQEEEEEGRRRYDLRNRAEVRRLSMEEGKPRPRSPRRVLYQGMGTKVGRDVRKGGSRVHKSHRFSRAEDSDDSLLVDELDQAPAIPWGRGGSRSGPPWLFGGLDVHGTTAWGLNVAASGWGHQSDAFASLGSGIQTAGPSSKGGADIQPLQVDESVTFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSCGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGSQARAEILDIHTRKWKHPPSKDLRLELAATCVGYCGADLKALCTEAAIRAFRKKYPQVYTCDDKFLIDVDSVHVEKNHFVEAMSAITPAAHRGTVVHSRPLSLVVAPLLQNHLSKSMNFIVDVFPPVAVSSELTKLSLLSYGSAIPLVYRPRLLLCGGEGVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLSQFHHWWETADEQLRAVLLTLLEELPADLPILLLVTASAPFAEVDKRALSVFPQRSIYPIGPPSIEERSLFFHRLIEAALSVLVEVTVEKSDVSPSLPELPKVPKVPSGPKVSELKAKVEAEQHALCRLRMCLRDICNRILYDKRFTVFHYPVSDEDAPNYCTIIQNPMDVATLLQRVDSGQYVMCLPFLQDVGLIVSNAKVYNGNDYSGSRIVSRAHELSDAVHGMLSQMDPALVAFCDKIAAQGGPLILEDDLGGLTFPSTPVVNLGTVTRASARLRNVQPEVNLDQSYEALKRPKKSVDTIQPPEDMSVACNSQELEAEKTNAERLETCEATIGNEHEPSGEASGTITDLNTTSSQDVIMSDSEISSQVESVKKIFVKRAENYSIPQLERLYSRIMKGVFENNKKDQGVTDEVNAGLSILKFLMKFAEDKTNF 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3863113 3872469 - Conep11aG0063400.1 Cone11ag0618 447870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0618 1188 MobiDBLite consensus disorder prediction 172 208 - -
Cone11ag0618 1188 Gene3D - 356 626 IPR027417 -
Cone11ag0618 1188 Gene3D - 870 998 IPR036427 GO:0005515(InterPro)
Cone11ag0618 1188 SMART bromo_6 878 985 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 PANTHER AAA DOMAIN-CONTAINING 1040 1161 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone11ag0618 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 621 IPR027417 -
Cone11ag0618 1188 Gene3D - 669 829 IPR027417 -
Cone11ag0618 1188 MobiDBLite consensus disorder prediction 101 152 - -
Cone11ag0618 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 829 IPR027417 -
Cone11ag0618 1188 Gene3D - 534 619 - -
Cone11ag0618 1188 FunFam ATPase family AAA domain-containing protein 870 998 - -
Cone11ag0618 1188 FunFam ATPase family, AAA domain-containing 2 356 539 - -
Cone11ag0618 1188 MobiDBLite consensus disorder prediction 249 268 - -
Cone11ag0618 1188 ProSiteProfiles Bromodomain profile. 901 963 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 FunFam ATPase family AAA domain-containing protein 2B 534 619 - -
Cone11ag0618 1188 PRINTS Bromodomain signature 910 926 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 PRINTS Bromodomain signature 926 944 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 PRINTS Bromodomain signature 944 963 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 Pfam Bromodomain 888 959 IPR001487 GO:0005515(InterPro)
Cone11ag0618 1188 Coils Coil 189 209 - -
Cone11ag0618 1188 MobiDBLite consensus disorder prediction 101 215 - -
Cone11ag0618 1188 Pfam AAA+ lid domain 561 597 IPR041569 -
Cone11ag0618 1188 Pfam ATPase family associated with various cellular activities (AAA) 398 533 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone11ag0618 1188 SUPERFAMILY Bromodomain 879 988 IPR036427 GO:0005515(InterPro)
Cone11ag0618 1188 ProSitePatterns AAA-protein family signature. 503 521 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone11ag0618 1188 SMART AAA_5 394 535 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0618 K22531 - - vvi:100242365 1565.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0618 Cone-Chr11:3863113 Cone14ag1047 Cone-Chr14:8819772 1.71E-73 dispersed
Cone11ag0618 Cone-Chr11:3863113 Cone18ag0880 Cone-Chr18:6205395 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33