Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0620 ATGGGGCTTCTGAAAACAGATATTTTGATCTGGGTTGTAAAGATCTTCACTTGGAAAGCTGGATTTCTCATAGAATTACTGATATTATCAGATTCATGGCTATTAGTCTCAGGTTTAGGTTCAATGTCTTCTCTTGCTGTTTCTTATGGTGAGAAAGGTCCTGTTTTCTGTAGCCTAAAGCCAGATGGATCCCACCTTGTGAACTGTTACGGGTCGAATTCTGCCATAACTTATGGAACTCCGTCTCATTTCCCATTCCTTGGTCTAACTGCCGGTTCCGGGTTTGCTTGTGGGCTTCTTATGGACTCAAACCAACCTTATTGTTGGGGAAGTAGTGGTTATATCCAAATGGGTGTTCCTCAACCTATGAGCAAAGGAGCAAAGTATTTAGAAATAAGTGCCGGCGATTATCATCTATGTGGGCTTAGACAGCCTTCATTCTTCACTGGAAGGCATAGATCCACTTCATACATTGATTGTTGGGGCTATAACATGACCAAAACCTTTGTATTTGATGGTCAAATCGAGTCACTTTCAGCTGGTTCGGAGTTTAATTGCGCACTATTTTCCCAAAATCGGACTGTTTTTTGTTGGGGAGATGAGACTAGCAGCCGGGTCATAACTTTAATCCCAAAAAACATGAGGTTTGACGAGATCTCATGTGGTGGATATCATGTTTGTGGGATTCTAGAAGGGGTGGATTCTAAGCCCTTTTGTTGGGGTAGAAGCTTAGACATTGAGGAAGAGATTTCGGTACCTTATTCGGGTCAAGGCAATGTTGACTTAGCTCCTAAGGATCCAATGATTTCTATTGTAGGAGGAAAATTTCATGCTTGTGGAATCAAGAAATATGATCAAGGAGTGATTTGTTGGGGCTCTATTGTGAAGCCTAGCACTCCTGCTCCGAATGGGATCAAAATAAATGAAATTGCTGCAGGAGACTACTTTACTTGTGGAGTTCCTGCCGATAAATCTCTCCTTCCGGTCTGTTGGGGGCTAGGATTTCCTACTTCTCTCCCTATGGCTGTTTCTCCTGGACAGTGCAAGTCCAGTCCTTGTTCACCCGGATTCTATGAAGCTAGCAATAGCAAAAGCCTTTGTAAGGATCCAAACTCTACAATGTGTCTTCCTTGTAGTGATAACTGCTCTTCTGAGATGTATGAAAAGATGGAATGCACTTTAAAGTCCAATAGACAATGTAAGTATAACTGTTCAAGTTGTTTCTCAACTGAATGCTTTTCAAATTGTTCATCTTCGGATGATGGAGAGGGTTTAGATGGGAAGAAGAATGAGAAGTTTTGGTCAATGCAATTGCCGGTTATTTTAGCTGAGATTGCCTTTGCTGTTATTTTGGTGACGATCGTGTCTTTAACTGCGATTCTATATGTTAAGTACAAGCTAAAGAATTGTGAGTGCTCGGGAAAGGAATCGTCAAAATCAAAGAGAAGCAGTAAGGGGCATGGGTCTTCTCTCGAAAAGGGTAATAATAATGACGGGAAAATAAGACCCGACTTGGGCGATCTTAAAATAAGGAGAGCTCAAATGTTTACATACGAGGAACTTGAAAGGGCTACTTGTGGGTTTAAAGAAGAGTCTTTAGTTGGAAAAGGAAGCTTCTCTTGTGTTTTTCGAGGCGTTTTGAAAGATGGAACCATTGTGGCCGTTAAACGGGCGATAATGTCTTCTAATATGCAAAAGAATTCTAAAGAGTTTCATACTGAGCTTGATTTACTTTCGAGGTTGAACCATGCTCATTTACTTAATCTTCTTGGTTATTGTGAAGAAGGAGGAGAGAGGCTTTTAGTCTATGAGTTCATGGCTCATGGGTCATTGCATCAACACCTCCATGGAAAGAACAATGCTTTGAAAGAGCAATTGGATTGGGTTCGTAGGGTGACAATAGCAGTCCAAGCTGCTAGAGGGATTGAGTACTTGCATGGGTATGCTTGCCCTCCTGTCATTCACCGTGACATTAAATCCTCAAACATACTTATTGATGAAGAGCATAATGCTCGTGTGGCAGATTTTGGTTTGTCATTATTGGGGCCCGTGGACAGTAGCTCCCCAATGGCCGAGCTACCAGCCGGGACCCTAGGATATCTTGATCCGGAATATTATAGACTCCACTACCTCACGACTAAATCTGACGTTTATAGCTTTGGAGTTCTGCTCTTGGAGATTCTTAGTGGGAGGAAAGCCATTGATATGCAATGTGAAGAATTGAATATAGTAGAATGGGCCGTGCCATTGATCCGGTCTGGAGACATATCAGCCATTTTGGACCCGGTATTGAAATGCCCACCTGATCTTGAAGCATTGAAGAGGATTGCAAATGTGGCTTGTAAATGTGTGAAGATGAGAGGGAAAGAGAGGCCGTCTATGGATCGAGTGACGACGGCATTGGAACGAGCCTTGGCTCAATTGATGGGAAGCCCGTGTAATGAGCAACCGATTTTGCCAACAGAAGTTGTTCTGGGGAGTAGTAGATTGCACAAGAAGCCATCTCAAAGGTCTTCTAACCGATCGGTTTCTGAGACGACTGAAGTGGCAGAAGGTGAGGATCAGCGGATTGAGTTCCCGGCCCCATCTTGGATTACTTTCCCAAGTGTTACCTCTTCTCAGAGGAGAAAGTCTTCGGTTTCGGAAGCAGATGTGGATGGGAAGAACTTGGAGCAAAGAAATGTCGGAAATGGTGGTGGTGGGGCTGGTGGAGATGTGTTGAGGAGTTTGGAGGAAGAGATAGGACCGGCTTCTCCTCAACAGCAATTGTACTTGGAGCATAATTTCTAA 2790 43.15 MGLLKTDILIWVVKIFTWKAGFLIELLILSDSWLLVSGLGSMSSLAVSYGEKGPVFCSLKPDGSHLVNCYGSNSAITYGTPSHFPFLGLTAGSGFACGLLMDSNQPYCWGSSGYIQMGVPQPMSKGAKYLEISAGDYHLCGLRQPSFFTGRHRSTSYIDCWGYNMTKTFVFDGQIESLSAGSEFNCALFSQNRTVFCWGDETSSRVITLIPKNMRFDEISCGGYHVCGILEGVDSKPFCWGRSLDIEEEISVPYSGQGNVDLAPKDPMISIVGGKFHACGIKKYDQGVICWGSIVKPSTPAPNGIKINEIAAGDYFTCGVPADKSLLPVCWGLGFPTSLPMAVSPGQCKSSPCSPGFYEASNSKSLCKDPNSTMCLPCSDNCSSEMYEKMECTLKSNRQCKYNCSSCFSTECFSNCSSSDDGEGLDGKKNEKFWSMQLPVILAEIAFAVILVTIVSLTAILYVKYKLKNCECSGKESSKSKRSSKGHGSSLEKGNNNDGKIRPDLGDLKIRRAQMFTYEELERATCGFKEESLVGKGSFSCVFRGVLKDGTIVAVKRAIMSSNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNNALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDSSSPMAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQCEELNIVEWAVPLIRSGDISAILDPVLKCPPDLEALKRIANVACKCVKMRGKERPSMDRVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKPSQRSSNRSVSETTEVAEGEDQRIEFPAPSWITFPSVTSSQRRKSSVSEADVDGKNLEQRNVGNGGGGAGGDVLRSLEEEIGPASPQQQLYLEHNF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3883312 3886275 - Conep11aG0063600.1 Cone11ag0620 447872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0620 929 FunFam Receptor protein kinase CRINKLY4 606 808 - -
Cone11ag0620 929 MobiDBLite consensus disorder prediction 473 503 - -
Cone11ag0620 929 Gene3D Transferase(Phosphotransferase) domain 1 606 816 - -
Cone11ag0620 929 MobiDBLite consensus disorder prediction 473 488 - -
Cone11ag0620 929 ProSiteProfiles Protein kinase domain profile. 528 805 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0620 929 MobiDBLite consensus disorder prediction 831 846 - -
Cone11ag0620 929 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 352 400 IPR001368 GO:0005515(InterPro)
Cone11ag0620 929 CDD STKc_IRAK 534 803 - -
Cone11ag0620 929 Gene3D - 165 349 IPR009091 -
Cone11ag0620 929 FunFam Serine/threonine-protein kinase-like protein CR4 38 207 - -
Cone11ag0620 929 SUPERFAMILY Protein kinase-like (PK-like) 511 801 IPR011009 -
Cone11ag0620 929 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524(InterPro)
Cone11ag0620 929 MobiDBLite consensus disorder prediction 827 922 - -
Cone11ag0620 929 SUPERFAMILY RCC1/BLIP-II 45 292 IPR009091 -
Cone11ag0620 929 Gene3D - 43 164 IPR009091 -
Cone11ag0620 929 FunFam serine/threonine-protein kinase-like protein CCR1 498 605 - -
Cone11ag0620 929 Gene3D Phosphorylase Kinase; domain 1 503 605 - -
Cone11ag0620 929 Pfam Protein tyrosine and serine/threonine kinase 531 800 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0620 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0620 929 SMART serkin_6 528 805 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0620 929 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 35 848 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0620 Cone-Chr11:3883312 Cone19ag1255 Cone-Chr19:8608207 8.30E-90 dispersed
Cone18ag0374 Cone-Chr18:1825674 Cone11ag0620 Cone-Chr11:3883312 2.23E-65 dispersed
Cone11ag0620 Cone-Chr11:3883312 Cone5ag0200 Cone-Chr5:832971 1.49E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81887 PF03407 Nucleotid_trans 9.90E-53 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0620 - - - 0.0