Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0630 ATGTACCAATCAACCTCTTCATCTTCCTCCTCACAAAAATCGACGGGCCCCAGCCATGGACGCGGCGGCGGCCTCACTCGTTATGTTTCAGCCCCTGGATCTCTCCTCAGCTCAGCCGTCGATTCCGTGATCGGAAGACATCGTGACTCAACCACAGGACTCAGATCGGCACCGTCACTTGCTGTGCCATACTTTTCCTCTGGCGATTCCGCCGTCGAGTCATCTTGCAAGGTCGTCCACTCTACATCAAACGATCCTAAATCCGCACCGAGAGACTTGCAGAGATCGTACGGCACTCCCGAGTTTGGCCTGGGTGATTTCTCTAGTACTATAAATTTAAACGGCCGTTCTGATCACGACGGATCTTCAGCTTCACCCTCTTCATCTCTAGTCCGTCAGAAGAGCTCGCCTGCTGGTTTCTTTAGCCATCTCACTGCTGCTCCTCCTGACAGTAATGGATTTTTCGTTACAAGGGGAACTGGAAATTATAGCTCACAAGGTGGCCGTGGAGTAGGAAGGTTAAAATCACAGTTGAGTTTCACAAGGCAAGATTCTCTCTCTCAAATCTCTGAAGTAAGTGAAAATGGTGTTGATGGGGTCAGCTCTCACGCTGGAATTCAGAGCATGTCTCACTCTTTTGATACATCTAGCTTCGGAATGGACTCTTGGGACACTACCAATTCGATTGTATTCTCTCCGCCATCAAGTAAAAGAGCCAGGAATGTAGATGGAGACATATATAGCAGTCTCGATGGCTTAGAGTCTCAGTTTAGCCTGCCTCAGACAGCTCTTGAGATGGGAATGGTGGAGAAGCTACTACAAATCCCTGAAGATTCTGTCCCTTGCAAAATACGAGCCAAGCGTGGCTTTGCCACTCATCCCCGCAGTATTGCTGAAAGGGAGAGGAGAATGAGAATAAGTGGGAAATTGAAGAAACTACAGGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATGCAGACATGTTAGACTTGGCAGTACAGCATATTAAGGGCCTTCAAAATCAAGTTCAGAATCTTCATAACGATCTTGAGAACTGCACATGTGGATGCAAACAATCCAAAGCTTAG 1092 47.62 MYQSTSSSSSSQKSTGPSHGRGGGLTRYVSAPGSLLSSAVDSVIGRHRDSTTGLRSAPSLAVPYFSSGDSAVESSCKVVHSTSNDPKSAPRDLQRSYGTPEFGLGDFSSTINLNGRSDHDGSSASPSSSLVRQKSSPAGFFSHLTAAPPDSNGFFVTRGTGNYSSQGGRGVGRLKSQLSFTRQDSLSQISEVSENGVDGVSSHAGIQSMSHSFDTSSFGMDSWDTTNSIVFSPPSSKRARNVDGDIYSSLDGLESQFSLPQTALEMGMVEKLLQIPEDSVPCKIRAKRGFATHPRSIAERERRMRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQVQNLHNDLENCTCGCKQSKA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4108654 4115142 + Conep11aG0064700.1 Cone11ag0630 447882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0630 363 Gene3D - 287 351 IPR036638 GO:0046983(InterPro)
Cone11ag0630 363 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983(InterPro)
Cone11ag0630 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 340 IPR011598 GO:0046983(InterPro)
Cone11ag0630 363 SMART finulus 296 346 IPR011598 GO:0046983(InterPro)
Cone11ag0630 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 354 IPR036638 GO:0046983(InterPro)
Cone11ag0630 363 MobiDBLite consensus disorder prediction 1 19 - -
Cone11ag0630 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 95 349 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone11ag0630 363 FunFam Transcription factor bHLH130 family 291 360 - -
Cone11ag0630 363 CDD bHLH_AtbHLH_like 295 347 IPR045239 -
Cone11ag0630 363 Coils Coil 330 350 - -
Cone11ag0630 363 MobiDBLite consensus disorder prediction 79 134 - -
Cone11ag0630 363 MobiDBLite consensus disorder prediction 103 134 - -
Cone11ag0630 363 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0630 Cone-Chr11:4108654 Cone20ag1083 Cone-Chr20:7521477 7.54E-38 dispersed
Cone11ag0630 Cone-Chr11:4108654 Cone18ag0874 Cone-Chr18:6086042 6.89E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44330 PF14159 CAAD 2.40E-30 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0630 - - - 0.0