Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0645 ATGGACTACCCCTATTCATCTAAGGGAAAGGGAATGGGGTACTGGAGTGAGGCTTCAAGAATTCAGATGGAAGATATAGACAGGGGACTGAAAAATCTGAGTTCAGAAGCAACTTATAATAACATTTCAGATTTTATGAATTTCGACCCTTTTTCCGGATGGTATAACAGCCCTGTATTAGGAGATCAGGTTTTGAGCTCTTATGGGTCCTTACCAGCTCCATCTATATCCTATGCTTCTATGGATGCTTCAAACTTTACAGTAGAGAACAGTGGGGCATTTCCTGTGACTAGTACCATTGCAAGTTCTTTCTGTCGTGATGGGGCTATGTTTCAAGAACCTGATACTGAATTTGGTTTTTCAAGTGATTCTATTGACGCAAATAATTCCCTTTCTAAACAAAAATTTGAATTGGACCCAGTTAGTTGTATCATCCCTAGGTCCTTTGGGTTCTTTGGGTGGTCACTTGATGAGAAAATGCTTAAGGCACTGTCTTTGTTTAAAGAGTCGTCAAGTGGGAGACTTTTGGCCCAAGTTTGGGTTCCAATGAAGTATGGAAACCAGTTTGTTTTAAGCACTAGTGAGCAACCCTATTTGCTTGATGAAACTCTTATGGGTTATAGAGAAGTGTCAAGGAAGTTTATATTCTCTGCAGAAGGAAAACCGAACGCTGTTCTTGGACTTCCTGGCCGTGTGTTTACCTCTAAACTACCTGAGTGGACTTCAAATGTAAGCTATTACGGTAAGGGGGAGTACCTGAGAATGGAACATGCACTTTGTCATCATGTCCGTGGATCCGTTGCCTTGCCTGTTGTTGACTGTCAGTCTGAACAGTCGTGCTGTGCTGTGCTTGAGCTTGTCACCACAAATGAGAAACCCAATTTTGATGAGGAGATGGAAACTGTTTGTCAAGCACTGAAGGCTGTGAATTTGGATACTATTTTACCTCCTCGGTTATCTCCCCAGAACCTAACAAAGAATCAAAGATTTGCACTAGCTGAAATAACTGATGTTCTAAGAGCTCTTTGTCATGCACATAGATTACCTTTGGCATTGACATGGATACCCTGCTGTTACAACTCGAGAGTCGATAATGATTGTGTGAGAGTACGAGTGAGGGAAGATAACATAAGACCCAATGAGAAATGTATATTGTGCATAGAGGAAACAGCTTGCTACATGAATGATAAAACGATGCAAGGCTTTGTGCATGCATGTCTGGAACATCATCTAGAGGAAGGTCAAGGGATAGCTGGAAAAGCCCTTAAATCAAATCATCCCTTTTTTTATCCTGATGTAAAAATATATGATATAAGTGAGTATCCACTTGTGCAACACGCTCGCAAATTTGGCCTGAATTCTGCAGTTGCAATCAGGCTTAGGAGCACTTACACTGGTGATGATGATTATATACTGGAGTTCTTCCTCCCAGTCAACATGACAGGGGGATCTGAACAACAACTCCTGTTAAACAACCTCTCTGGTACAATGCAGAGAATCTGTAAAACTCTAAGGACAGTGTCAGAGTTAGAATTAGTAGAGACTGGAAGCTCTAAAGTTGGGTTTCAGGGATCAACTCAAAGGTTTTCATCTATGCCTAGGAGAAACTCACAGTCAACATTATCGGATAGTGACCTGAACACAGTGGAGAAGTTGAAGGAATCTAACTCAACAAATGATGGAATTGGAGCAGACTGCTCTCCTAAGCAGGAATCAAGTGGATCACGAAGACAGGTAGAGAAAAAACGAAGCATGGGCGAGAAAATTGTGAGCTTAACTGTTCTTCAGCAATACTTTTCTGGGAGTCTCAAGGATGCTGCAAAAAGAATCGGCGTTTGCCCTACAACCCTGAAACGGATATGCAGACAACATGGGATTTCAAGATGGCCATCCCGGAAGATAAACAAGGTCAACCGTTCCTTAAAGAAAATACAAACCGTGCTTGATTCAGTTCAGGGTGTGGAGGGAAGATTGAAGTTTGATCCAACCACTGGAGGATTGATTGCAGCTGGTTCTATCATCCAGGAATTGGAAGGAAGGAACAATCTTCTCTTCTCTGAACCTAATCTACCTGTTAGACACCATGAACCCTCTACTCAAGATGCAGTTTCACTCCCTTTAGAACCCGTTAATTGTGAAATTTCTATAATCAAGTCAGAACAGGATGAGTTTTTTATGGGTGCACGATGCCAAATGTCGCCCTTAAGAGTCTTTCCTCCAAAAAAATCCAATTGCAGTGAAGACTCGAATTCAACTGCATTATTAGATGAATCACCATGTCAACTCCCTTGGGCTAGTACAGAAAATGAATTGGGTATTATTGAAAAGGATTGTTTAAAATTAGAGAATACCAATTGTCATTTTGTTTCTCTAAGCTCAAGCTCATTGGCTGCTAATACTGATGAGCTGGATACTGGTTTGGAAGGTGAAGATGGAACTGTGGAACATAACCAGCCCACCTCTAAAAGCATGACAGACTCATCGAACATTTCCGACTCTTTAATGCATGTAAGTCCTTCAAGTTCTGAAAGCACAAAGGGCCAAAAGCATTTGAAAGACGAAATAAATTGTGGTGAAAGTGAATCCAAAATCATTGTGAAAGCTTCGTACAGAGAAGACACAGTTCGATTTAAGTTTCAACCTTCCTGTTCTGGGTGTTTCCAACTCTATGAAGAAGTTGCAAAGAGGTTTAAGTTGCAGAGTGGGACATTTCAACTAAAGTACTTAGATGATGAAGAAGAATGGGTGATGGTAGTTAATGATTCAGATTTGCAAGAGTGTCTTGAGATAATGGATGATGTTGGGACGAGGAATGTGAAGTTCCTAGTTTGTGACTTGCGTGTATTGTGA 2850 41.02 MDYPYSSKGKGMGYWSEASRIQMEDIDRGLKNLSSEATYNNISDFMNFDPFSGWYNSPVLGDQVLSSYGSLPAPSISYASMDASNFTVENSGAFPVTSTIASSFCRDGAMFQEPDTEFGFSSDSIDANNSLSKQKFELDPVSCIIPRSFGFFGWSLDEKMLKALSLFKESSSGRLLAQVWVPMKYGNQFVLSTSEQPYLLDETLMGYREVSRKFIFSAEGKPNAVLGLPGRVFTSKLPEWTSNVSYYGKGEYLRMEHALCHHVRGSVALPVVDCQSEQSCCAVLELVTTNEKPNFDEEMETVCQALKAVNLDTILPPRLSPQNLTKNQRFALAEITDVLRALCHAHRLPLALTWIPCCYNSRVDNDCVRVRVREDNIRPNEKCILCIEETACYMNDKTMQGFVHACLEHHLEEGQGIAGKALKSNHPFFYPDVKIYDISEYPLVQHARKFGLNSAVAIRLRSTYTGDDDYILEFFLPVNMTGGSEQQLLLNNLSGTMQRICKTLRTVSELELVETGSSKVGFQGSTQRFSSMPRRNSQSTLSDSDLNTVEKLKESNSTNDGIGADCSPKQESSGSRRQVEKKRSMGEKIVSLTVLQQYFSGSLKDAAKRIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGRLKFDPTTGGLIAAGSIIQELEGRNNLLFSEPNLPVRHHEPSTQDAVSLPLEPVNCEISIIKSEQDEFFMGARCQMSPLRVFPPKKSNCSEDSNSTALLDESPCQLPWASTENELGIIEKDCLKLENTNCHFVSLSSSSLAANTDELDTGLEGEDGTVEHNQPTSKSMTDSSNISDSLMHVSPSSSESTKGQKHLKDEINCGESESKIIVKASYREDTVRFKFQPSCSGCFQLYEEVAKRFKLQSGTFQLKYLDDEEEWVMVVNDSDLQECLEIMDDVGTRNVKFLVCDLRVL 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4281071 4286828 + Conep11aG0066200.1 Cone11ag0645 447897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0645 949 SMART PB1_new 863 946 IPR000270 GO:0005515(InterPro)
Cone11ag0645 949 MobiDBLite consensus disorder prediction 523 584 - -
Cone11ag0645 949 SUPERFAMILY CAD & PB1 domains 860 945 - -
Cone11ag0645 949 PANTHER PROTEIN NLP8 135 943 IPR045012 GO:0003700(InterPro)
Cone11ag0645 949 Pfam NLP protein GAF domain 323 505 IPR055081 -
Cone11ag0645 949 Pfam PB1 domain 865 943 IPR000270 GO:0005515(InterPro)
Cone11ag0645 949 MobiDBLite consensus disorder prediction 814 845 - -
Cone11ag0645 949 Pfam RWP-RK domain 590 636 IPR003035 -
Cone11ag0645 949 Gene3D - 858 944 - -
Cone11ag0645 949 MobiDBLite consensus disorder prediction 523 573 - -
Cone11ag0645 949 ProSiteProfiles PB1 domain profile. 863 947 IPR053793 -
Cone11ag0645 949 MobiDBLite consensus disorder prediction 803 853 - -
Cone11ag0645 949 ProSiteProfiles RWP-RK domain profile. 569 657 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0645 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0645 Cone-Chr11:4281071 Cone9ag0876 Cone-Chr9:4266120 2.37E-139 dispersed
Cone11ag0645 Cone-Chr11:4281071 Cone18ag0864 Cone-Chr18:5955332 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44331 PF11331 zinc_ribbon_12 1.40E-17 CL0167 Cone TF