Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0666 ATGGCCACAAAACCCCACGTATTTAAGGGAATAATCGTGCCATTAGTTCCTGCTTCTTCCTTCGAATCTTCTTCTTCGACCTCCAACCGTATCTGCTTCGTCGTCAACAAACCCCTAACCTCGTCTTTTCTCAATAATGGAGGGTTGAAAATAGTACCTTCCAACCAATCTCTTCGATGCAGAAAGCGTGGTGGTGCACTTGGTGCTCGTATGAACCTATTTGACCGGTTTGCAAGGGTTGTTAAGTCATATGCCAATGCAGTTATAAGTTCTTTTGAAGATCCAGAGAAAATCCTAGAACAAACAGTTCTAGAGATGAATGATGACCTGATGAAGATGCGCCAGGCTACCGCACAAGTATTGGCATCTGAAAAGCAGTTAGACAATAAGTATAAAGCTGCCCAACAAGCTTCTGAAGATTGGTATCGTAAAGCGCAATTCGCTCTGCAGAAAGGAGATGAGGATCTTGCTCGTGAAGCTTTGAAAAGGCGTAAATCATATGCTGATAATGCTAATTCCTTGAAAGGTCAACTAGATCAGCAGAAGAATGTCGTAGAAAATCTTGTTTCTAATACACGGCTTTTGGAAAGCAAGATACAGGAGGCGAGGTCAAAGAAAGACACACTTAAAGCTCGTGCCCAGTCGGCAAAGACGGCAACCAAAGTGAGTGAAATGTTGGGGAATGTCAACACAAGCAGTGCTCTCTCCGCTTTTGAGAAGATGGAGGATAAAGTTATGGCAATGGAGTCTCAGGTTGAAGCTCTTGGTCAGTTAACTGCTGATGACATTGAAGGAAAGTTTGCTTTGCTGGAGGGCTCATCTGTTGATGATGATTTAGCAGATTTAAAGAAAGAGTTATCTGGAAGCTCCAAGAAAGGGGAGCTTCCACCTGGAAGAAGTGTAGGAAGCGGCCCGAGCAAAGGATTTCCAATTCGAGATTCTGAGATTGAGATGGAGCTTAATGAACTGAGGCAAAAGGCCAAGGATTTCTAG 993 43.61 MATKPHVFKGIIVPLVPASSFESSSSTSNRICFVVNKPLTSSFLNNGGLKIVPSNQSLRCRKRGGALGARMNLFDRFARVVKSYANAVISSFEDPEKILEQTVLEMNDDLMKMRQATAQVLASEKQLDNKYKAAQQASEDWYRKAQFALQKGDEDLAREALKRRKSYADNANSLKGQLDQQKNVVENLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEDKVMAMESQVEALGQLTADDIEGKFALLEGSSVDDDLADLKKELSGSSKKGELPPGRSVGSGPSKGFPIRDSEIEMELNELRQKAKDF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4446361 4451654 + Conep11aG0068300.1 Cone11ag0666 447918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0666 330 Coils Coil 171 219 - -
Cone11ag0666 330 Pfam PspA/IM30 family 72 286 IPR007157 -
Cone11ag0666 330 Coils Coil 238 258 - -
Cone11ag0666 330 MobiDBLite consensus disorder prediction 281 317 - -
Cone11ag0666 330 PANTHER MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC 26 330 IPR007157 GO:0009507(PANTHER)|GO:0010027(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0666 K03969 - - cit:102609397 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0666 Cone-Chr11:4446361 Cone5ag0948 Cone-Chr5:4058585 2.81E-131 dispersed
Cone11ag0666 Cone-Chr11:4446361 Cone18ag0842 Cone-Chr18:5738459 2.47E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1293 . . . . . . . . . . Cma06g01697 Cma14g01428 . Car14g01258 . . Cpe03g01200 . . . . . . . . . . . . . . . . . Cone11ag0666 . . . Cme07g01951 . . . . . . . . . . Cmo14g01464 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004034 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 41