Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0712 ATGAATAATCAAGCTCTGAATACGGAAGGAGATGAGGAAGACGCGGTCTTCCTTGATGAAACTGACATCATCCGTGAAGTTACTGATGATGAAGAAGATCTTCCTGATGCTATAGATGGTTATTGCGAAGATGACTCTGATTCTGAAACTGCTGAGGAACCTGATGATTCAATGCATATCTTCAGGGGCCATAATGGTGAAGTTTACACAGTTTCTTGCAGCCCTGGAGACCCCAAATTAGTGGCAACAGGGGGTAGAGATGACAAAGGGTTTCTTTGGAGAATTGGTCAAGGATACTTTACTTTTGAGCTTCAGGGTCATAGGGATTCTGTAACAAGCGTATTATTTAGTTATGATGGACAGTTGCTTGCATCAAGTAGCTTGGATGGAGTTATCCAGATCTGGGATGTGTCAGGAAATCATCAATGTAAACTGGATGGTCATGGAGGAAGTATTGAGTGGGTGAGGTGGCACCCTAGAGGACACTTGCTCCTGGCTGGTTCTGATGATGGTACTGCTTGGATGTGGAATTGTGACAGAGGCGCCTATCTGAATGTATTTTCAGGTCATGGGGCTAGTGTGACTTGTGGTGATTTCACCCCTGATGGTAAAACAATATGTACTGGTTCTGATGATGCAACATTAAGGATATGGAATCCAAGAACTGGCGAAAACATTCATGTTGTTCAAGGTCATCCTTATCATACCAAAGGGTTGACTTGCTTGGCAGTAAGCTCTGATTCGACTCTGGCCCTCACTGGCTCAAAGGATGGCTCTGTTCACATTGTGAATATAGTAACTGGAAAGGTTGTTAATTCTCTGCTTTCCCATACTGACTCAGTGGAGTGCATTGGGCTTTCATCAAGCTCTTCTTGGGCAGCTACTGGGAGCATTGATCAGAAGCTCATTATTTGGGACCTCCAACATTCCTCACCTCGTTGTGTATGCGAGCATAATGAGGGAGGGGTTATATGCTTGGCATGGCTTGGTTTATCCAGGTTCGTGGCTAGTGGATGTGAGGATGGAAAAGTAAGAATATGGGATAGTCGATCCGGTGATTGTGTAAGAATCTTCTCTGGCCACACTACCACCATTCAGTCTCTTTCTGTGTCTGCTAGCCATGAGTTCCTTGTTTCGGTTTCTTCTGATGAAACTGCTCGAGTTTTTGAGATTGCAGAATTTTTTTAG 1188 44.11 MNNQALNTEGDEEDAVFLDETDIIREVTDDEEDLPDAIDGYCEDDSDSETAEEPDDSMHIFRGHNGEVYTVSCSPGDPKLVATGGRDDKGFLWRIGQGYFTFELQGHRDSVTSVLFSYDGQLLASSSLDGVIQIWDVSGNHQCKLDGHGGSIEWVRWHPRGHLLLAGSDDGTAWMWNCDRGAYLNVFSGHGASVTCGDFTPDGKTICTGSDDATLRIWNPRTGENIHVVQGHPYHTKGLTCLAVSSDSTLALTGSKDGSVHIVNIVTGKVVNSLLSHTDSVECIGLSSSSSWAATGSIDQKLIIWDLQHSSPRCVCEHNEGGVICLAWLGLSRFVASGCEDGKVRIWDSRSGDCVRIFSGHTTTIQSLSVSASHEFLVSVSSDETARVFEIAEFF 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4899389 4904991 + Conep11aG0073000.1 Cone11ag0712 447964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0712 395 FunFam Angio-associated migratory cell protein-like protein 54 393 - -
Cone11ag0712 395 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 8 394 IPR051179 -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 95 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 CDD WD40 101 390 - -
Cone11ag0712 395 MobiDBLite consensus disorder prediction 28 52 - -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Cone11ag0712 395 SMART WD40_4 54 94 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 138 177 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 180 219 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 351 390 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 267 306 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 97 136 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 222 264 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SMART WD40_4 309 348 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 308 - -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 224 - -
Cone11ag0712 395 ProSitePatterns Trp-Asp (WD) repeats signature. 293 307 IPR019775 -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 308 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cone11ag0712 395 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Cone11ag0712 395 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Gene3D - 54 393 IPR015943 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 268 306 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 142 177 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 352 389 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 224 262 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 101 136 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 58 93 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 316 348 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 395 - -
Cone11ag0712 395 ProSitePatterns Trp-Asp (WD) repeats signature. 335 349 IPR019775 -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 138 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 MobiDBLite consensus disorder prediction 28 54 - -
Cone11ag0712 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 395 IPR001680 GO:0005515(InterPro)
Cone11ag0712 395 SUPERFAMILY WD40 repeat-like 57 390 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0712 K24725 - - vvi:100254220 587.415
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42