Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0715 ATGGGGCTATCTTTCACCAAGCTTTTCAGCCGGCTCTTCGCTAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACTACCATTCTGTACAAGCTCAAGCTTGGCGAGATTGTCACCACCATTCCCACAATTGGTTTCAACGTCGAGACCGTGGAATATAAGAACATCAGCTTTACTGTGTGGGATGTTGGTGGCCAGGACAAGATCAGACCATTGTGGAGACACTACTTCCAAAACACACAAGGACTTATATTTGTCGTTGATAGCAATGACCGTGACCGTGTTGTTGAAGCTAGGGACGAGCTGCACAGAATGTTGAATGAGGATGAGTTGAGAGATGCAGTCCTGTTAGTATTTGCAAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAGATTACTGATAAGCTTGGCCTTCACTCCCTCCGTCAACGCCACTGGTACATCCAAAGCACTTGTGCGACATCTGGTGAAGGGCTGTATGAAGGACTCGACTGGCTCTCAAACAATATTGCAAGCAAGGCATAG 546 46.52 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4928701 4931246 - Conep11aG0073300.1 Cone11ag0715 447967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0715 181 FunFam ADP-ribosylation factor 1 1 181 - -
Cone11ag0715 181 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525(InterPro)
Cone11ag0715 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone11ag0715 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone11ag0715 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 178 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Cone11ag0715 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 178 IPR027417 -
Cone11ag0715 181 SMART rab_sub_5 18 180 - -
Cone11ag0715 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Cone11ag0715 181 Gene3D - 4 181 IPR027417 -
Cone11ag0715 181 SMART arf_sub_2 1 181 - -
Cone11ag0715 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924(InterPro)
Cone11ag0715 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone11ag0715 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone11ag0715 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone11ag0715 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0715 K07937 - - gmx:547532 365.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0715 Cone-Chr11:4928701 Cone12ag0646 Cone-Chr12:5907563 9.12E-130 dispersed
Cone11ag0715 Cone-Chr11:4928701 Cone11ag0110 Cone-Chr11:485248 3.18E-130 transposed
Cone11ag0715 Cone-Chr11:4928701 Cone10ag0824 Cone-Chr10:4191588 3.18E-130 transposed
Cone11ag0715 Cone-Chr11:4928701 Cone3ag0861 Cone-Chr3:4404615 3.18E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297