Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0721 ATGCATTCTAAGGCAAGTAGAGCACTTGTTGGGAATGTATTGCAACGGTTTTGTCAACAATGCAGTAGGTTTCATGCTCTTCACGAGTTTGATGAAGGGAGAAGAAGTTGCCGTAGGCGTTTGGCTGGCCATAATCAAAGGAGAAGAAAAACAAATCCTGACCCAGTTGTGAATAAGAGTCCCTCTCCTGATGATCAGACTAGTGGCTATCTACTCATGCGTCTACTCAAGATACTTTCCAACATGCACTCCAATGGGTCAAACCAAACAACAGATCAGGATATGCTGTCTCATCTCGTAAGGAGCCTTGCCTGTCAAACTAGTGATCAAGGGGGAAGAAACATATCTGGGTTTTTGCAAGAATCTCCATATTTTCTAACCAATAGAAACTCCATTGGAGTCTCTGAACTAGCTTCTAAGTTTCTCCCAAATGGTCCTCAGGTGGGCCCGTCAAGATTAACAGGGGACCGCCCTCCAGGACCTTCATCTGAGACTCCTGAACAAGGAGGAATCATGGGTTCTGGTAAAACTAAGGGTAGAGATATAGAAATCACGTCTTTAAAACCGAGCGTTTCAAACAGCCCTCCATCTTATACTGAAAACAGGGAAACTGCTGTGGGACAAAGCAAGGTGATCAATTTTGATTTGAATGATATATATGTTGATTCAGATGATGGTATGGAAGATATGGGGAGGTTGTCTCCCCCTGATAATTTGGGGATGAGTTCACTTGAGTGTCCTTCTTGGGTCCAACAAGACTCTCATCAATCAAGTCCACCACAAACTAGTGGAAATTCAGAGTCCGTATTTGCTCCTTCTCCCTCTAGCTCTAATGGAGAAGCTCAGATCCGAACTGACCGTATTGTCTTCAAACTGTTTGGAAAAGAACCAAATGATTTTCCTCTTGTTCTCCGATCTCAGATATTTGATTGGCTATCAAACAGTCCTTCTGACATTGAGAGCTACATCCGCCCTGGCTGCGTCATTCTGACAATATATCTCCGCCAGACAGAGGCTGCTTGGGACGAGCTTTGCTATGACTTAAGTGCAAGTTTAAATAGGCTTCTGCAAGTCTCAGATGATGCTTTCTGGAAAACTGGATGGGTTTATATTAGGCTTCGGCATCAAATAGCTTTTGTTAACCATGGTCAGGTTGTAATAGACACATCCTTGCCTCTTAGAGGCGATAATTATGGTAGAATAGTAAGTGTGAAACCTATCGCAGTATCTGCCTCTGAGTCGGCTCGGTTTTCAGTTAGAGGCTCAAACTTGATCCGACCAGCAACAAGGTTACTTTGTGCATTAGAAGGGAAGTATCTAACTCAGACTTCTAGTCAAGAATCGAAAGAAAGTGTAGAGAGCTCAAGGGAGCAAGATGGCATGCAATGCATTAGCTTTTCTTGCTCCATTCCAATAATCAATGGACGGGGATTTATCGAGGTAGAAGATCATGGTCTCAGCAGCAGCTTCATTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCAGAGATCCGTTTGCTCGAGACTGCTTTTGAGCCAACTGAGATAGATTCGGTAAATCCTGAGTGCTCTACAAAACCAGAAGTGAGGAATCAAGCAATGGACTTCATTCACGAAATGGGTTGGCTTCTTCATAGGACTCAACTGAAGTGCCGGCTTGGCGGCTTGGCCCCAAACTCAGACCTCTTCCCTCTGGAACGGTTCAAGTGGCTAGTTGACTTTTCCATGGACCGTGATTGGTGTGCCGTACTGAAGAAGCTGTTGGATGTTTTGGTTGATGGTGGGACTGTTGGTTTTGGAGATTACCCTTCATTGAGATTTGCATTATCTGAGATGGGTCTTCTTCACCTCGCTGTGAGGAGAAGTAGTAGGCCATTGGTTGGACTCCTTTTAGGATATAACTCTAAAATCCTCATTGATACACTAGAATCTGAAGTAGAAAGTGGTCCTGGATTCTTGTTCAGACCTGATGCTAAAGGCCCTGCTGGTTTGACCCCACTTCACATCGCCGCTGGTAAAGACGATTCTGAGGAGATAATCGATGCATTAACTAACGATCCTGCAATGGTGGGACTTGAGGCATGGAAGAGTGCACGTGACAGCACGGGGTCAACCCCGGAAGATTACGCCCGCCTACGTGGCCACTACTCATATATCCACTTGGTCCAGAAGAAGATCAACAAGAGAACAACATCATCCGGGCACATGATCCTAGACATTCCCAGAATCCTCTCGGAAAATAGTACGAATCAAAAGTCGGACATTAATGATCAGTTGACCACCGAATTTGAGGTTGGAAGTTTCGAACTTAGTAGGCCTGTTAAGCAGAACTGCAGGCTTTGTGCTCGGAAAGCGGCATCACACAGAAGAGTGGGCCGGTCTCTGGTATATAGGCCTGCAATGCTTTCAATGGTGGCTGTGGCTGCAGTTTGTGTTTGTGTTGCCCTTCTGTTTAAAAGCTCTCCGGAAGTTCTCTATGTTTTCCAGCCGTTCAGGTGGGAATCTCTGGAGTTCGGAACAATCTGA 2526 45.05 MHSKASRALVGNVLQRFCQQCSRFHALHEFDEGRRSCRRRLAGHNQRRRKTNPDPVVNKSPSPDDQTSGYLLMRLLKILSNMHSNGSNQTTDQDMLSHLVRSLACQTSDQGGRNISGFLQESPYFLTNRNSIGVSELASKFLPNGPQVGPSRLTGDRPPGPSSETPEQGGIMGSGKTKGRDIEITSLKPSVSNSPPSYTENRETAVGQSKVINFDLNDIYVDSDDGMEDMGRLSPPDNLGMSSLECPSWVQQDSHQSSPPQTSGNSESVFAPSPSSSNGEAQIRTDRIVFKLFGKEPNDFPLVLRSQIFDWLSNSPSDIESYIRPGCVILTIYLRQTEAAWDELCYDLSASLNRLLQVSDDAFWKTGWVYIRLRHQIAFVNHGQVVIDTSLPLRGDNYGRIVSVKPIAVSASESARFSVRGSNLIRPATRLLCALEGKYLTQTSSQESKESVESSREQDGMQCISFSCSIPIINGRGFIEVEDHGLSSSFIPFIVAEEDVCSEIRLLETAFEPTEIDSVNPECSTKPEVRNQAMDFIHEMGWLLHRTQLKCRLGGLAPNSDLFPLERFKWLVDFSMDRDWCAVLKKLLDVLVDGGTVGFGDYPSLRFALSEMGLLHLAVRRSSRPLVGLLLGYNSKILIDTLESEVESGPGFLFRPDAKGPAGLTPLHIAAGKDDSEEIIDALTNDPAMVGLEAWKSARDSTGSTPEDYARLRGHYSYIHLVQKKINKRTTSSGHMILDIPRILSENSTNQKSDINDQLTTEFEVGSFELSRPVKQNCRLCARKAASHRRVGRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4985716 4991224 - Conep11aG0073900.1 Cone11ag0721 447973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0721 841 SUPERFAMILY SBT domain 1 56 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone11ag0721 841 MobiDBLite consensus disorder prediction 186 205 - -
Cone11ag0721 841 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 836 IPR044817 GO:0003677(InterPro)
Cone11ag0721 841 MobiDBLite consensus disorder prediction 40 67 - -
Cone11ag0721 841 MobiDBLite consensus disorder prediction 142 179 - -
Cone11ag0721 841 Gene3D - 1 38 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone11ag0721 841 Gene3D - 600 738 IPR036770 -
Cone11ag0721 841 MobiDBLite consensus disorder prediction 249 280 - -
Cone11ag0721 841 SUPERFAMILY Ankyrin repeat 612 721 IPR036770 -
Cone11ag0721 841 ProSiteProfiles Zinc finger SBP-type profile. 1 51 IPR004333 GO:0003677(InterPro)
Cone11ag0721 841 Pfam SBP domain 1 50 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0721 Cone-Chr11:4985716 Cone13ag0543 Cone-Chr13:5691888 1.44E-18 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone17ag0385 Cone-Chr17:1823945 0 wgd
Cone11ag0721 Cone-Chr11:4985716 Cone18ag0772 Cone-Chr18:4379669 0 wgd
Cone11ag0721 Cone-Chr11:4985716 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44341 PF13812 PPR_3 5.40E-11 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0721 - - - 0.0