Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0721 ATGCATTCTAAGGCAAGTAGAGCACTTGTTGGGAATGTATTGCAACGGTTTTGTCAACAATGCAGTAGGTTTCATGCTCTTCACGAGTTTGATGAAGGGAGAAGAAGTTGCCGTAGGCGTTTGGCTGGCCATAATCAAAGGAGAAGAAAAACAAATCCTGACCCAGTTGTGAATAAGAGTCCCTCTCCTGATGATCAGACTAGTGGCTATCTACTCATGCGTCTACTCAAGATACTTTCCAACATGCACTCCAATGGGTCAAACCAAACAACAGATCAGGATATGCTGTCTCATCTCGTAAGGAGCCTTGCCTGTCAAACTAGTGATCAAGGGGGAAGAAACATATCTGGGTTTTTGCAAGAATCTCCATATTTTCTAACCAATAGAAACTCCATTGGAGTCTCTGAACTAGCTTCTAAGTTTCTCCCAAATGGTCCTCAGGTGGGCCCGTCAAGATTAACAGGGGACCGCCCTCCAGGACCTTCATCTGAGACTCCTGAACAAGGAGGAATCATGGGTTCTGGTAAAACTAAGGGTAGAGATATAGAAATCACGTCTTTAAAACCGAGCGTTTCAAACAGCCCTCCATCTTATACTGAAAACAGGGAAACTGCTGTGGGACAAAGCAAGGTGATCAATTTTGATTTGAATGATATATATGTTGATTCAGATGATGGTATGGAAGATATGGGGAGGTTGTCTCCCCCTGATAATTTGGGGATGAGTTCACTTGAGTGTCCTTCTTGGGTCCAACAAGACTCTCATCAATCAAGTCCACCACAAACTAGTGGAAATTCAGAGTCCGTATTTGCTCCTTCTCCCTCTAGCTCTAATGGAGAAGCTCAGATCCGAACTGACCGTATTGTCTTCAAACTGTTTGGAAAAGAACCAAATGATTTTCCTCTTGTTCTCCGATCTCAGATATTTGATTGGCTATCAAACAGTCCTTCTGACATTGAGAGCTACATCCGCCCTGGCTGCGTCATTCTGACAATATATCTCCGCCAGACAGAGGCTGCTTGGGACGAGCTTTGCTATGACTTAAGTGCAAGTTTAAATAGGCTTCTGCAAGTCTCAGATGATGCTTTCTGGAAAACTGGATGGGTTTATATTAGGCTTCGGCATCAAATAGCTTTTGTTAACCATGGTCAGGTTGTAATAGACACATCCTTGCCTCTTAGAGGCGATAATTATGGTAGAATAGTAAGTGTGAAACCTATCGCAGTATCTGCCTCTGAGTCGGCTCGGTTTTCAGTTAGAGGCTCAAACTTGATCCGACCAGCAACAAGGTTACTTTGTGCATTAGAAGGGAAGTATCTAACTCAGACTTCTAGTCAAGAATCGAAAGAAAGTGTAGAGAGCTCAAGGGAGCAAGATGGCATGCAATGCATTAGCTTTTCTTGCTCCATTCCAATAATCAATGGACGGGGATTTATCGAGGTAGAAGATCATGGTCTCAGCAGCAGCTTCATTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCAGAGATCCGTTTGCTCGAGACTGCTTTTGAGCCAACTGAGATAGATTCGGTAAATCCTGAGTGCTCTACAAAACCAGAAGTGAGGAATCAAGCAATGGACTTCATTCACGAAATGGGTTGGCTTCTTCATAGGACTCAACTGAAGTGCCGGCTTGGCGGCTTGGCCCCAAACTCAGACCTCTTCCCTCTGGAACGGTTCAAGTGGCTAGTTGACTTTTCCATGGACCGTGATTGGTGTGCCGTACTGAAGAAGCTGTTGGATGTTTTGGTTGATGGTGGGACTGTTGGTTTTGGAGATTACCCTTCATTGAGATTTGCATTATCTGAGATGGGTCTTCTTCACCTCGCTGTGAGGAGAAGTAGTAGGCCATTGGTTGGACTCCTTTTAGGATATAACTCTAAAATCCTCATTGATACACTAGAATCTGAAGTAGAAAGTGGTCCTGGATTCTTGTTCAGACCTGATGCTAAAGGCCCTGCTGGTTTGACCCCACTTCACATCGCCGCTGGTAAAGACGATTCTGAGGAGATAATCGATGCATTAACTAACGATCCTGCAATGGTGGGACTTGAGGCATGGAAGAGTGCACGTGACAGCACGGGGTCAACCCCGGAAGATTACGCCCGCCTACGTGGCCACTACTCATATATCCACTTGGTCCAGAAGAAGATCAACAAGAGAACAACATCATCCGGGCACATGATCCTAGACATTCCCAGAATCCTCTCGGAAAATAGTACGAATCAAAAGTCGGACATTAATGATCAGTTGACCACCGAATTTGAGGTTGGAAGTTTCGAACTTAGTAGGCCTGTTAAGCAGAACTGCAGGCTTTGTGCTCGGAAAGCGGCATCACACAGAAGAGTGGGCCGGTCTCTGGTATATAGGCCTGCAATGCTTTCAATGGTGGCTGTGGCTGCAGTTTGTGTTTGTGTTGCCCTTCTGTTTAAAAGCTCTCCGGAAGTTCTCTATGTTTTCCAGCCGTTCAGGTGGGAATCTCTGGAGTTCGGAACAATCTGA 2526 45.05 MHSKASRALVGNVLQRFCQQCSRFHALHEFDEGRRSCRRRLAGHNQRRRKTNPDPVVNKSPSPDDQTSGYLLMRLLKILSNMHSNGSNQTTDQDMLSHLVRSLACQTSDQGGRNISGFLQESPYFLTNRNSIGVSELASKFLPNGPQVGPSRLTGDRPPGPSSETPEQGGIMGSGKTKGRDIEITSLKPSVSNSPPSYTENRETAVGQSKVINFDLNDIYVDSDDGMEDMGRLSPPDNLGMSSLECPSWVQQDSHQSSPPQTSGNSESVFAPSPSSSNGEAQIRTDRIVFKLFGKEPNDFPLVLRSQIFDWLSNSPSDIESYIRPGCVILTIYLRQTEAAWDELCYDLSASLNRLLQVSDDAFWKTGWVYIRLRHQIAFVNHGQVVIDTSLPLRGDNYGRIVSVKPIAVSASESARFSVRGSNLIRPATRLLCALEGKYLTQTSSQESKESVESSREQDGMQCISFSCSIPIINGRGFIEVEDHGLSSSFIPFIVAEEDVCSEIRLLETAFEPTEIDSVNPECSTKPEVRNQAMDFIHEMGWLLHRTQLKCRLGGLAPNSDLFPLERFKWLVDFSMDRDWCAVLKKLLDVLVDGGTVGFGDYPSLRFALSEMGLLHLAVRRSSRPLVGLLLGYNSKILIDTLESEVESGPGFLFRPDAKGPAGLTPLHIAAGKDDSEEIIDALTNDPAMVGLEAWKSARDSTGSTPEDYARLRGHYSYIHLVQKKINKRTTSSGHMILDIPRILSENSTNQKSDINDQLTTEFEVGSFELSRPVKQNCRLCARKAASHRRVGRSLVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4985716 4991224 - Conep11aG0073900.1 Cone11ag0721 447973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0721 841 SUPERFAMILY SBT domain 1 56 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone11ag0721 841 MobiDBLite consensus disorder prediction 186 205 - -
Cone11ag0721 841 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 836 IPR044817 GO:0003677(InterPro)
Cone11ag0721 841 MobiDBLite consensus disorder prediction 40 67 - -
Cone11ag0721 841 MobiDBLite consensus disorder prediction 142 179 - -
Cone11ag0721 841 Gene3D - 1 38 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone11ag0721 841 Gene3D - 600 738 IPR036770 -
Cone11ag0721 841 MobiDBLite consensus disorder prediction 249 280 - -
Cone11ag0721 841 SUPERFAMILY Ankyrin repeat 612 721 IPR036770 -
Cone11ag0721 841 ProSiteProfiles Zinc finger SBP-type profile. 1 51 IPR004333 GO:0003677(InterPro)
Cone11ag0721 841 Pfam SBP domain 1 50 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0721 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0721 Cone-Chr11:4985716 Cone13ag0543 Cone-Chr13:5691888 1.44E-18 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone17ag0385 Cone-Chr17:1823945 0 wgd
Cone11ag0721 Cone-Chr11:4985716 Cone18ag0772 Cone-Chr18:4379669 0 wgd
Cone11ag0721 Cone-Chr11:4985716 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone17ag0385 . 186 1025 SBP-box Gene Family AT2G47070 54.9 4.2e-239 825.1
Cone18ag0772 . 188 1028 SBP-box Gene Family AT2G47070 53.0 7.3e-236 814.3
Cone20ag1033 . 196 983 SBP-box Gene Family AT2G47070 57.1 9.6e-236 813.9
Cone11ag0721 . 1 840 SBP-box Gene Family AT2G47070 52.7 6.2e-235 811.2
Cone4ag0183 . 26 579 SBP-box Gene Family AT5G18830 52.2 1.4e-163 574.3
Cone14ag0513 . 11 271 SBP-box Gene Family AT1G02065 51.1 8.2e-43 171.4
Cone13ag0543 . 12 165 SBP-box Gene Family AT2G42200 53.5 2.1e-37 154.1
Cone18ag0772 . 25 1028 SBP-box Gene Family AT3G60030 50.8 3.2e-257 885.6
Cone17ag0385 . 21 1025 SBP-box Gene Family AT3G60030 52.3 1.9e-254 876.3
Cone20ag1033 . 30 983 SBP-box Gene Family AT3G60030 53.5 6.2e-253 871.3
Cone11ag0721 . 1 840 SBP-box Gene Family AT3G60030 52.4 4.1e-228 788.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44341 PF13812 PPR_3 5.40E-11 CL0020 Cone TF