Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0733 ATGTCAGCCGTCGCTACAACAAGCGTTGTGCCGCCGATTAGGCGTCGGGGTCCCAACACGGTGGAAGATAAGTTGGAGTTCGAGACGACGGAAGGGGTGGAGCCGATCTTGAGCTTCGACCAGATGGGAATCAAGGACGATTTGCTCCGTGGAATCTACGCCTACGGTTTTGAGAAGCCCTCGGCTATTCAGCAGAGGGCTGTTAGGCCCATTATCGAGGGTCGCGATGTCATTGCACAGGCTCAATCCGGTACTGGCAAGACGTCCATGATTGCCCTCACCGTTTGCCAGATGGTTGATACTGCTAACAGAGAGGTCCAGGCTCTGATCTTGTCTCCAACAAGGGAATTGGCTACTCAGACAGAGAAAGTTATACTGGCAATTGGTGATTACATAAATATACAAGCACATGCTTGCATTGGGGGCAAAAGTGTTGGTGAAGATATTAGAAAGCTAGAATATGGAGTACATGTGGTGTCTGGAACTCCAGGTAGAGTTTGTGACATGATCAAGAGGAGAACGTTGCGTACTAGAGCCATTAAATTACTCATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATCTATGATGTGTATAGATATCTCCCACCTGATCTTCAGGTTTGTTTGATATCTGCCACCCTTCCTCATGAAATTTTGGAGATCACAAACAAGTTTATGACAGATCCTGTAAGAATCCTTGTGAAGCGTGATGAGTTGACTTTGGAGGGGATTAAGCAATTTTTTGTTGCAGTCGAAAAAGAAGAGTGGAAATTTGATACTTTATGTGATCTCTACGATACCCTTACCATTACACAGGCTGTTATTTTCTGTAACACCAAAAGAAAGGTGGAATGGCTGACAGAGAAGATGCGTAATAATAACTTTACTGTTTCACAAATGCATGGAGATATGCCTCAAAGGGAGCGAGATGCAATTATGGGTGAGTTTCGATCTGGCACCACCCGGGTGCTGATAACGACGGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGTTTCCCTAGTGATTAATTATGACCTTCCGAACAACCGAGAACTTTACATTCACAGGATTGGTCGATCTGGTCGTTTTGGACGCAAGGGTGTTGCGATAAACTTTGTCAAGAGTGATGACATCAAAATCCTTAGAGACATTGAGCAATATTACAGTACCCAGATTGATGAAATGCCCATGAACGTTGCTGATTTGATCTGA 1233 44.85 MSAVATTSVVPPIRRRGPNTVEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTANREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRNNNFTVSQMHGDMPQRERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5092891 5096090 - Conep11aG0075100.1 Cone11ag0733 447985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0733 410 FunFam Eukaryotic initiation factor 4A-III 20 241 - -
Cone11ag0733 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Cone11ag0733 410 Pfam DEAD/DEAH box helicase 62 225 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone11ag0733 410 Gene3D - 242 410 IPR027417 -
Cone11ag0733 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Cone11ag0733 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cone11ag0733 410 Gene3D - 22 241 IPR027417 -
Cone11ag0733 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cone11ag0733 410 SMART helicmild6 290 371 IPR001650 -
Cone11ag0733 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Cone11ag0733 410 SMART ultradead3 56 253 IPR014001 -
Cone11ag0733 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Cone11ag0733 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Cone11ag0733 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cone11ag0733 410 CDD SF2_C_DEAD 250 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0414 Cone-Chr11:2056628 Cone11ag0733 Cone-Chr11:5092891 7.69E-90 dispersed
Cone11ag0733 Cone-Chr11:5092891 Cone7ag1231 Cone-Chr7:9130316 3.13E-177 dispersed
Cone11ag0733 Cone-Chr11:5092891 Cone18ag0777 Cone-Chr18:4413828 4.32E-295 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0733 K13025 - csv:101222664 771.155