Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0763 ATGGCTCATCCTAGAAGTCTTGCAACATTAATATTCTCTGCTCTTCCTATTCATATCGTATTCTCATTCCTCACCCTAAGCCGCCTCGATCGGACTTATGCCGACTATGGGGGATGGGAGAGCGCTCACGCCACATTCTATGGCGGAGGTGATGCATCCGGCACAATGGGAGGTGCTTGTGGATATGGAAACTTGTACAGCCAAGGGTACGGGACTAATACGGCAGCATTGAGCACTGCTCTTTTCAACAACGGCTTGAGCTGTGGGGCCTGCTACGAGATCACCTGCAGCTCAGACCCCAAATGGTGCCTTTCTGGGACCATAACAGTAACGGCAACAAACTTTTGCCCTCCAAACAATGCCTTGCCTAATAACAATGGTGGTTGGTGCAATCCTCCTCTCCAGCACTTTGACTTGGCCGAGCCTGCTTTTCTCCAAATTGCTCAATACCGGGCTGGAATCGTCCCCGTCTCATTTAGAAGGGTCTCATGTGTGAAGAAAGGAGGAATAAGGTTTACCATTAACGGTCACTCCTACTTCAACCTGGTGTTGATTTCGAACGTCGGGGGTGCAGGGGATGTGCACTCTGTATCGATCAAGGGATCAAAGACAGGGTGGCAGGTGATGTCAAGGAACTGGGGCCAGAATTGGCAAAGCAATTCTTATCTTAATGGCCAGGCCCTCTCTTTCCAGGTCACTACTAGCGACGGTCGAACCATCACGAGTTATAATGTTGCACCGTCTGATTGGCAATTCGGAAAGACTTATGAGGGGCCTCAATTCTGA 786 49.87 MAHPRSLATLIFSALPIHIVFSFLTLSRLDRTYADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEITCSSDPKWCLSGTITVTATNFCPPNNALPNNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLISNVGGAGDVHSVSIKGSKTGWQVMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTITSYNVAPSDWQFGKTYEGPQF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5439759 5441188 + Conep11aG0078400.1 Cone11ag0763 448015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cone11ag0763 261 Pfam Lytic transglycolase 74 159 IPR009009 -
Cone11ag0763 261 SMART dpbb_1 74 159 IPR007112 -
Cone11ag0763 261 CDD DPBB_EXPA_N 38 164 - -
Cone11ag0763 261 FunFam Expansin 169 261 - -
Cone11ag0763 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Cone11ag0763 261 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Cone11ag0763 261 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Cone11ag0763 261 SUPERFAMILY Barwin-like endoglucanases 38 187 IPR036908 -
Cone11ag0763 261 Gene3D - 168 261 IPR036749 -
Cone11ag0763 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 169 IPR007112 -
Cone11ag0763 261 Gene3D - 26 164 IPR036908 -
Cone11ag0763 261 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 PANTHER EXPANSIN-A15 21 261 IPR002963 GO:0009664(InterPro)
Cone11ag0763 261 FunFam Expansin 28 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0763 Cone-Chr11:5439759 Cone1ag1621 Cone-Chr1:57641927 8.80E-159 dispersed
Cone11ag0763 Cone-Chr11:5439759 Cone5ag0142 Cone-Chr5:611803 1.03E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0763 - - - 0.0