Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0778 ATGAGGAGCAAGATTAGGATACAAAGGGGGAGAAGTGAAATTCGTCGGAGAATCGGAAAATTAATGAACTGTTTATGCTCAGAAGAGCAATTAAGAGCAGGAGATGAAATGGTCCCATCATCTGAATCCCTTGCCACTAAGGATTACTCGAGGAGAGGGTATTCTCCTCAAGCTTGTGAGGCTGTTAAGAAGCTAGATGCTGGTAACATAGAAGAGGCAGAATCGTCTCTTAGAGAGAGTGGTTGTTTGAACTATGAGGAGGCAAGAGCATTGTTAGGAAGATATGAGTATCAGAAAGGAAATATAGAAGCAGCTTTACGTGTATTTGAAGGAATCGATGTTAATGCAATAATTCCAAAAGTAATGATCACCATTGCAAGAAGAGGAGAGCATCAGAAGAGATGTTCTATAAGCTTTGATGCCCCACCAATGTCTATGCATGCCGTTAGCTTACTGTTAGAAGCCATCTTTCTTAAATCTAAGTCATTGCAGAGCCTTGCGCGGTATAGAGAAGCGGCTCAATCTTGCCAAGTTATTCTTGACATAGTGGAATCTTCTGTACCAAAAGGCATGCCTATAAATTTTCTTGCCTCTGACTCTAAATTGCAAGAGACCCTCAATAATACCGTAGAACTTCTACCCGAATTATGGAAACAAACTGATTCTCCAACCGAAACAATCTTGTCATACAGGCGGGCCCTTCTCCATCATTGGAACCTTGATACAGAAACTACTGCTAAAATTGAAAAAGAGTTTGCCATTTTTCTTCTCTACACTGGAGGTGAAGCAAGCCCTCCAAACCTTCGTTCCCAAATGGACACTTCCTTTGTACCAAGAAACAATACAGAAGAAGCCATACTTCTACTTATGATACTATTAAGAAAAGTTACTCTTAAGAAAATTGAGTGGGACCCGTCAATCTTGGATCACCTATCATTCGCTCTCTCCATCTCAGACGACACTAGGACTTTAGCAAGTCAAGTAGAAGAACTTCTTCCATCGATTTTGGACCGAAAAGAAAGATATCATACGCTTGCCCTTTGTTATTATGGAGCAGGGGAGGAATTGACTGCTTTGAACTTACTGAGGAAAATTGTGCACCCTTGTGAGGATCCAAAATACCCTCTTGATTTATTGATGGCATCTAAGATTTGTACGGAAAATCGAAACCCGGAAGATGGAGAAAAATTTGCTCGTAAAGCACTTCAAAATTTGGATGGTAGGTGTGATCAATTAAAAGGTGTAGCCAATTTTTTGTTGGGTCTTTCCCTTTCAGAATGTACTAAATCAGCCATTGTTGATTCTGAAAGAGTTATCAAATCATCTGAGGCTCTTCAGGTTCTAGAAAATGCTGGCAGATTGACAAGAATTACAAACCCAGATATTATTTACCATCTATGTCTAGAAAATGCCGAGCAAAGAAAATTGGATGCTGCAATAAGCTATGCTAAGCATTTGCTTAAATTGGAAGGTGGGTCTAATGTTAAATCGTGGTTACTGATGGCACAAGTGTTGTCGGCTCAAAAACGGTTTGATGATGGAAAAGCTGTTATAGAAGCTGCTTTGGATCAGACTGGAAAATGGGATCAAGGAGAATTGCTTCGTACAAAAGCGAAGCTTTTAATGGCACAGGGAGAGTTAAATGGTGCCATTGAGACTTACATGCGGTTACTTGCTCATCTTCAAGTTCAGAGTAAAAGCTTTGGCTCGGGAAAGAAGATTCTTAAGGGCAGCAGAAGTTCTGCAAGAAGCATGGAATTAGATACATGGCTTGATCTGGCTAATGTCTACATAGGTCTTTCACAATGGCACGATGCAGAGATTTGTCTTTCTAAATCTAAGGCCATACGTCCTTATTCTGCTTCTAGATGTCACACAATTGGTGTACTGCTTGAAGCAAAAGGACTCCATAAGGATGCCTTAAAGGCCTTTAAGGAAGCGTTGGACATTGATCCAAGTCATGTCTCAAGCTTGATTTCCGTAGCTGCGATTCTTAGAAAGCTCGGACGCTTTTCTCATCCAATTGTCCAATGCTTTTTGATGGAAGCTTTACGGCTTGATAGATTGAACTACGCTGCATGGTACAATCTCGGCTTATATCACAAATCATACGGTTCTATAGCCGAGGCTGTTGAATGTTTTGAGGCTGCAGCTTTTCTTCAAGACACTGCCCCAGTTGAACCTTTCAGATAA 2193 40.72 MRSKIRIQRGRSEIRRRIGKLMNCLCSEEQLRAGDEMVPSSESLATKDYSRRGYSPQACEAVKKLDAGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALRVFEGIDVNAIIPKVMITIARRGEHQKRCSISFDAPPMSMHAVSLLLEAIFLKSKSLQSLARYREAAQSCQVILDIVESSVPKGMPINFLASDSKLQETLNNTVELLPELWKQTDSPTETILSYRRALLHHWNLDTETTAKIEKEFAIFLLYTGGEASPPNLRSQMDTSFVPRNNTEEAILLLMILLRKVTLKKIEWDPSILDHLSFALSISDDTRTLASQVEELLPSILDRKERYHTLALCYYGAGEELTALNLLRKIVHPCEDPKYPLDLLMASKICTENRNPEDGEKFARKALQNLDGRCDQLKGVANFLLGLSLSECTKSAIVDSERVIKSSEALQVLENAGRLTRITNPDIIYHLCLENAEQRKLDAAISYAKHLLKLEGGSNVKSWLLMAQVLSAQKRFDDGKAVIEAALDQTGKWDQGELLRTKAKLLMAQGELNGAIETYMRLLAHLQVQSKSFGSGKKILKGSRSSARSMELDTWLDLANVYIGLSQWHDAEICLSKSKAIRPYSASRCHTIGVLLEAKGLHKDALKAFKEALDIDPSHVSSLISVAAILRKLGRFSHPIVQCFLMEALRLDRLNYAAWYNLGLYHKSYGSIAEAVECFEAAAFLQDTAPVEPFR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5968850 5972842 + Conep11aG0080200.1 Cone11ag0778 448030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0778 730 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 Gene3D Tetratricopeptide repeat domain 581 726 IPR011990 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 621 654 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 691 724 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 587 620 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 Pfam Tetratricopeptide repeat 623 654 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 Pfam Tetratricopeptide repeat 692 717 IPR019734 GO:0005515(InterPro)
Cone11ag0778 730 SUPERFAMILY TPR-like 530 717 IPR011990 GO:0005515(InterPro)
Cone11ag0778 730 PANTHER PROTEIN NPG1 12 730 IPR043376 -
Cone11ag0778 730 Gene3D Tetratricopeptide repeat domain 279 568 IPR011990 GO:0005515(InterPro)
Cone11ag0778 730 SUPERFAMILY TPR-like 338 557 IPR011990 GO:0005515(InterPro)
Cone11ag0778 730 ProSiteProfiles TPR repeat profile. 691 724 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0778 Cone-Chr11:5968850 Cone4ag0348 Cone-Chr4:1595449 5.48E-290 dispersed
Cone11ag0778 Cone-Chr11:5968850 Cone6ag0261 Cone-Chr6:1199416 1.31E-201 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0778 K21843 - vvi:100258327 959.518