Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0816 ATGGTTTTTTGTCTTGAGTTCTGTTCGGAGAGAACAATGCCCTCTTTTATTCTACTTCTTCTTATTATTCTGGTCGATTTCCCCATCTCTTGCTCAGGGTTTTCACAATTACAAGTATACTTCTCTCCTTATGTACCGCCAAACCGGCTAACATCTATGAGGGAACTCTCAATGGAACAAGCTAGGTCAATTTTAATGATAGTTTCACATGCTCTGCCAAAACCTCATAGTAGACGAGTATTTAATCCTTCTCTAGAGGCATCTGCTACTCCTGCACCTTCTCCACATTCTCAAGGGCCTAGCAGCTCACCATTACCTAATCATCATTGGCATCATCGTCATGTTAGATCTCATTTGGTCGCTCCAACCCCTTCTAAAGACCAAGGATGTGATCAAATCTGTGTGGAGCCACTTACTGCAACTCCCTTTGGTTCGCCTTGTGGATGTGTGTTTCCCATGAAAGTCCAACTTCTTTTGGACGTAGCCCCTTTTTCTGTTTTTCCTGTAATGAATGAGCTTGAGATTGAGATTGCAGAGGGTACGTATTTGACGCAAAGTCAAGTGAAAATAATGGGTGCTAGTGCGGATACTCAAAATCAAGGGAAAACAGTGGTGGATGTTAACCTGGTACCCCTTGGAGAGAAGTTTGACAACACCACTGCAGTCTTAACTTCTGAAAGATTTTGGCATAAGAATGTGCCTCTTAATAGCACTCTTTTTGGTAGTTATGATGTGATGTATGTCAGATATCCAGGGCTTCCTTCTTCACCACCTTATGGGAGTTATGTGGGGAAGGGTCCAAGTGGAAGTCGAGAAGATCTTCCTATCTCTGCGAATTTCGTAAACAAGAGCAAGAGGATGAGTATTAGAACCATTGCCATCATTGCTTTGTCTGCATTTGTATTATTACTGGTTTTCCTCGGTGCTCTGTTTGTTTATGTAAAATGGAGGAAGTTTAGAAGGCCGTCAAGTGCTGTTGGTCCTGCCTTTACATCATCTATAAATAAAAGATCCGTCCTGTCAAGTTGCATGGCAAGCTCTACCTCAGTTTCCCTGATTTCCACCATGGCTACTTGCATTCCATCTGTCAAGACATTTACCTGCCCCGAACTTGTGAAAGCCACAGATAAGTTCAGCTCAAAGAGGCTTCTAGGAGAAGGGGGATTTGGGCGTGTTTATCATGGCATTGTAGAAAATGGAACTGAAGTTGCAGTTAAGTTGCTTACCAGGGATAATAATCAGAATGGTGACCGTGAATTTATTGCAGAAGTTGAGATGCTTAGTCGGTTACATCACCGTAATCTCGTGAAATTGATTGGTATATGCATTGAAGGACGTGTGCGCTGCTTAGTCTATGAGCTTGTTCACAATGGCAGTGTTGAGTCCCATTTGCATGGTGTTGACATGAAAAAGGGACCTCTTGACTGGGATGCACGGTTGAAAATTGCTCTCGGAGCAGCGAGAGGGTTGGCTTATCTTCATGAAGATTCTAACCCTCGAGTAATTCACCGTGATTTCAAGGCTAGTAATGTTTTATTGGAAGATGACTTCACCCCCAAAGTTTCAGATTTTGGATTGGCAAGGGAAGCAACTGAAGGAAGTGAACATATATCTACACGAGTTATGGGAACTTTTGGGTATGTAGCCCCTGAATATGCAATGACAGGACATCTACTTGTCAAAAGTGATGTTTACAGTTATGGTGTCGTTCTGCTTGAGCTTCTCTCTGGCAGGAAGCCTGTGGAAATGTCCCAACCTCAGGGACAGGAGAACCTAGTAACATGGGCACGAACCCTACTGACTAGTAGAGATGGTTTGGAGCAACTAATTGATCCTTCTTTGGCTGGAAGTTATGACTTTGATGACATGGCTAGCGTAGCAGCCATTGCTTCTATGTGTGTACACCCAGAGGTGACTCACAGGCCATTTATGGGAGAAGTTGTCCAGGCTCTTAAACTTATATATAACGACACGGACGAGGCATGTGGGGATTTTTGCAGCCCAAGGGAGTCCTCTGCTCAAGACTCGGACTTCAAAGGAGATCTGGTACCATCAGATAGCAGTTGGTGGAATGCTGGTGGGCTAACACCTCGATTGACTTATGGGCTGGCCTCTTCCTTCATTACGATGGAGTACAGCTCTGGCCCACTTGAAGAGATGGAAAATAGACACCATTCAACTTCAAGTTTAGTAGGGGATGAGGTATCTTTACCAGTCAGGCATGGGAACAGGTCTGGTCCCTTGAGAACAATTCGGAGCAAACCTGCTTTTTATAAATTGTCAGGTAGTAGGAGCGATCATGGTGGACTTCTTTCGAGAATTTGGAATGATGGGTACTGGGTTTAA 2346 43.86 MVFCLEFCSERTMPSFILLLLIILVDFPISCSGFSQLQVYFSPYVPPNRLTSMRELSMEQARSILMIVSHALPKPHSRRVFNPSLEASATPAPSPHSQGPSSSPLPNHHWHHRHVRSHLVAPTPSKDQGCDQICVEPLTATPFGSPCGCVFPMKVQLLLDVAPFSVFPVMNELEIEIAEGTYLTQSQVKIMGASADTQNQGKTVVDVNLVPLGEKFDNTTAVLTSERFWHKNVPLNSTLFGSYDVMYVRYPGLPSSPPYGSYVGKGPSGSREDLPISANFVNKSKRMSIRTIAIIALSAFVLLLVFLGALFVYVKWRKFRRPSSAVGPAFTSSINKRSVLSSCMASSTSVSLISTMATCIPSVKTFTCPELVKATDKFSSKRLLGEGGFGRVYHGIVENGTEVAVKLLTRDNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRVRCLVYELVHNGSVESHLHGVDMKKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVEMSQPQGQENLVTWARTLLTSRDGLEQLIDPSLAGSYDFDDMASVAAIASMCVHPEVTHRPFMGEVVQALKLIYNDTDEACGDFCSPRESSAQDSDFKGDLVPSDSSWWNAGGLTPRLTYGLASSFITMEYSSGPLEEMENRHHSTSSLVGDEVSLPVRHGNRSGPLRTIRSKPAFYKLSGSRSDHGGLLSRIWNDGYWV 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6690935 6700314 - Conep11aG0084100.1 Cone11ag0816 448068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0816 781 MobiDBLite consensus disorder prediction 85 105 - -
Cone11ag0816 781 MobiDBLite consensus disorder prediction 722 745 - -
Cone11ag0816 781 Gene3D Transferase(Phosphotransferase) domain 1 455 667 - -
Cone11ag0816 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0816 781 ProSiteProfiles Protein kinase domain profile. 378 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0816 781 Gene3D Phosphorylase Kinase; domain 1 350 454 - -
Cone11ag0816 781 PANTHER OS01G0750732 PROTEIN 132 677 IPR050885 -
Cone11ag0816 781 FunFam Receptor-like serine/threonine-protein kinase ALE2 455 669 - -
Cone11ag0816 781 Pfam Protein tyrosine and serine/threonine kinase 381 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0816 781 SUPERFAMILY Protein kinase-like (PK-like) 362 655 IPR011009 -
Cone11ag0816 781 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524(InterPro)
Cone11ag0816 781 MobiDBLite consensus disorder prediction 85 108 - -
Cone11ag0816 781 CDD STKc_IRAK 384 654 - -
Cone11ag0816 781 FunFam receptor-like serine/threonine-protein kinase ALE2 351 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0816 Cone-Chr11:6690935 Cone18ag0817 Cone-Chr18:5195317 0 dispersed
Cone18ag0160 Cone-Chr18:838292 Cone11ag0816 Cone-Chr11:6690935 1.80E-38 dispersed
Cone11ag0812 Cone-Chr11:6623544 Cone11ag0816 Cone-Chr11:6690935 9.80E-89 proximal
Cone11ag0816 Cone-Chr11:6690935 Cone18ag0752 Cone-Chr18:4146543 2.51E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81896 PF01423 LSM 4.30E-17 CL0527 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0816 - - - 0.0