Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0858 ATGGCGACGAACCGGTTTGTGTGTGAGATATGCAGCAAAGGGTTTCAAAGGGACCAGAATTTACAGTTACATAGAAGAGGACACAATCTGCCATGGAAGCTTAGGCAAAGAACAAGCACGGAAATGAAGAAGAGGGTTTACATTTGTCCCGAGCCGACATGTGTTCATCACAATCCAGGGCGGGCCTTGGGGGATCTTACTGGTATAAAGAAGCATTTCAGCAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAAGTATGCTGTTCAATCGGATTGGAAGGCTCATCTGAAGACTTGTGGTACTAGAGAGTACAAATGTGATTGTGGTACTATCTTTTCCAGGAGAGATAGCTTTATCACCCACAGAGCTTTTTGTGATGCATTAGCAGAAGAAAACAAGAAAGTAAACATGAATAGTACAGTTAATAGATCCTCACCAGTATCATCAAACTCACCAAACACATCTCATCATGATCATCATCACCAACAACATCAGCATCAAATCCCAGATTTCATCCCCTCTATCTCCATTAATACACCTCTTCCAATCATCTCTGATCATCACCAACTCATGATCAACAGCAACATGAACAACTCCGGTACCTTTCATCATGAATCCAGAATCAACCCACTTAAATCCCTCCCTCAAGAATTTGTCCCAATCCCATTTAAGCCCATGAACATGAGCACTAGTACTAGTATTCCTAGTACAAGTATCGGAGGCAAGAATAATAATAGTAATAGCAATTTATTCCAACTAAGCTCTAGTACTAGTTTTAGCACTCAGCTTCATGATAGCAAAAATGGGTGTCAAGTTTCATCATCACCTATGTCATCAATCCCCATGTCCGCCACAGCTTTGTTACAGAAAGCGGCACAGATGGGGGCCGCCACGGCTAGTAATGGTACTATAAACTCACCCATGATGGCCCAGAAGAACTTTGTGAGTAGCATGGCAGGTCCTGATTATAGAGCTAATAATCATGGTAATAATGTTGCTACCATGCATAACAATATGAGCATTTCATATCTTGATCATAATCATTTTCAATCAAACATGGTGGGGATCATGAACCAAAGTAGCTCAATGATGGATATGGGAATATTTAGTCAAATGATGATGATGAGAGGAAGTCACTATCATCATCCGAATCAGAATCAAAATCAAAACCTTCTTGGTGGGTGCTTGAAAAATGTGACAGAAGAGGATGATACTACAAGTTCTAGTAATTTAAGGTGGCTTTCGACGTTTGAAGGGAGTAACAATGGTGGTAATAGTAATAATGGTTGTACAAGAGGGAATCATGAGTCATTAACACTTAATTTGTTAGGGGAAGGTGGAGGAGGTTTGAGGGTATGCCATGGGAATAATTTGATTGATGATCATCATCATGAGGAGGCCGAAACATTGCCGATTAATGTGAATCCTTTTCAGCAACAGGTTTCACATGACCATTCTTCTGCTATTGATAAATCTATGTGGGAGGTATGA 1506 40.37 MATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTSTEMKKRVYICPEPTCVHHNPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENKKVNMNSTVNRSSPVSSNSPNTSHHDHHHQQHQHQIPDFIPSISINTPLPIISDHHQLMINSNMNNSGTFHHESRINPLKSLPQEFVPIPFKPMNMSTSTSIPSTSIGGKNNNSNSNLFQLSSSTSFSTQLHDSKNGCQVSSSPMSSIPMSATALLQKAAQMGAATASNGTINSPMMAQKNFVSSMAGPDYRANNHGNNVATMHNNMSISYLDHNHFQSNMVGIMNQSSSMMDMGIFSQMMMMRGSHYHHPNQNQNQNLLGGCLKNVTEEDDTTSSSNLRWLSTFEGSNNGGNSNNGCTRGNHESLTLNLLGEGGGGLRVCHGNNLIDDHHHEEAETLPINVNPFQQQVSHDHSSAIDKSMWEV 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7118979 7122692 + Conep11aG0088600.1 Cone11ag0858 448110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0858 501 FunFam Zinc finger protein MAGPIE 2 29 - -
Cone11ag0858 501 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Cone11ag0858 501 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Cone11ag0858 501 SMART c2h2final6 82 102 IPR013087 -
Cone11ag0858 501 SMART c2h2final6 6 28 IPR013087 -
Cone11ag0858 501 SMART c2h2final6 47 77 IPR013087 -
Cone11ag0858 501 Gene3D Classic Zinc Finger 40 130 - -
Cone11ag0858 501 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Cone11ag0858 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 448 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone11ag0858 501 MobiDBLite consensus disorder prediction 142 171 - -
Cone11ag0858 501 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 81 105 - -
Cone11ag0858 501 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cone11ag0858 501 MobiDBLite consensus disorder prediction 142 158 - -
Cone11ag0858 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Cone11ag0858 501 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 43 77 - -
Cone11ag0858 501 Gene3D Classic Zinc Finger 5 29 - -
Cone11ag0858 501 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 108 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0858 Cone-Chr11:7118979 Cone9ag1538 Cone-Chr9:11184713 3.72E-89 dispersed
Cone11ag0858 Cone-Chr11:7118979 Cone3ag0793 Cone-Chr3:4085646 3.27E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44346 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0858 - - - 0.0