Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0862 ATGGAGTTGTACGGACGAACCTCGTTGAGGAACGGATCGCAAATGGTCCAGCAGCCGGAATGGAGTCCTTCCGGCGGAGAAACCGGACTCGAAGAATCGATGTGGCAATTAGGGCTGACAAGTAGCGAATCGTATCCAGAGCGTCCTGGAGTTCCCAACTGTGTGTATTATATGAGAACTGGATTCTGCGGATATGGTATTAGGTGTCGTTACAATCACCCTCGTGATCGAGCTGCGGTTGCAGCAGCTGTCAGAGCTACAGGAGATTATCCAGAGCGAGTGGGGGAACCTACATGCCAGTATTATTTGAAAACCGGGACCTGTAAATTTGGTGCATCCTGTAAGTTTCACCACCCGAAACATGCAGGTGGATCCTTGAGTCAGGCTCCACTTAATTTCTATGGATATCCACTACGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAGTTTGGCCTAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAGAGCCAGCTTCTGCACCCCAATTTTATCCACAGGTGCAGTCTCCTTCAGTTCCTATGCCTAAACAATATGGAGGGGCATCCACAAGTTTGGGGGTAGCCAGGCCATTGTTACCAGGTTCATATGTGCAAGGAGCCTATGGTCCTTTGTTACTGCCCCCTGGAGTTGTTCCTATTCAGGGGTGGAGTCCTTACTCGACACCTGTAAGCCCTGTATTATCTCCTGGTGCTCAACCCACGGTTGGATCGGCTTCTCTTTATGGTGTAACCCCGATTTCTTCTTCAACCCCTTCTCTTGGAAGACCGTATCTCTCATTACCTTCTTCTGTTGTCCCTTCAAGCAGTAACCAACAGGAACTGGCATTTCCAGAGAGACCAGGTGAACCTGAATGCGTTTACTATTTAAAAACAGGTGACTGTAAGTTTGGGTCAGGCTGTCGATTCCATCATCCTCGAGATTGGGTTGCATCAGCCACAAATTCTGTACTTAGCTCGCTTGGTCTCCCTTTGCGTCCGGGGGTGCATCCTTGTACATTTTACTTGCAAAACGGACACTGCAAGTTTGGATCAACATGTAAATTTGACCATCCAATGGGAACAATAAGATACAACCCATCAGCCTCATCTCTTATTGACACGCCAGTTGCTCCTTACCCAGCTGGCTCACTTCTAGCTACTCTGGCTCCATCTTCTACCTCAGAGCTTCGGCCCGAACTAATTCCCGGATCTCGAAATGAATCCTATCTGTCCAGATTGCCTTCTTCTTCCACTAATTCAGTTGGCTTAATTTACTCTCAGACTGGATCCGAAGTGCAAATTTCAAGTCAGAGCTCTGCCCCCTCAAACAGTACCAAAAGCACAAGATAG 1377 48.0 MELYGRTSLRNGSQMVQQPEWSPSGGETGLEESMWQLGLTSSESYPERPGVPNCVYYMRTGFCGYGIRCRYNHPRDRAAVAAAVRATGDYPERVGEPTCQYYLKTGTCKFGASCKFHHPKHAGGSLSQAPLNFYGYPLRPGEKECSYYLKTGQCKFGLTCKFHHPQPAGTSEPASAPQFYPQVQSPSVPMPKQYGGASTSLGVARPLLPGSYVQGAYGPLLLPPGVVPIQGWSPYSTPVSPVLSPGAQPTVGSASLYGVTPISSSTPSLGRPYLSLPSSVVPSSSNQQELAFPERPGEPECVYYLKTGDCKFGSGCRFHHPRDWVASATNSVLSSLGLPLRPGVHPCTFYLQNGHCKFGSTCKFDHPMGTIRYNPSASSLIDTPVAPYPAGSLLATLAPSSTSELRPELIPGSRNESYLSRLPSSSTNSVGLIYSQTGSEVQISSQSSAPSNSTKSTR 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7153370 7157612 + Conep11aG0089000.1 Cone11ag0862 448114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0862 458 SUPERFAMILY CCCH zinc finger 300 323 IPR036855 GO:0046872(InterPro)
Cone11ag0862 458 MobiDBLite consensus disorder prediction 404 427 - -
Cone11ag0862 458 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872(InterPro)
Cone11ag0862 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 322 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 368 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 PANTHER PROTEIN PHOSPHATASE RELATED 31 369 IPR050974 GO:0003729(PANTHER)
Cone11ag0862 458 SMART c3hfinal6 295 322 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 SMART c3hfinal6 48 75 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 SMART c3hfinal6 341 368 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 SMART c3hfinal6 139 166 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 SMART c3hfinal6 93 120 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 MobiDBLite consensus disorder prediction 7 24 - -
Cone11ag0862 458 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 Gene3D - 126 175 - -
Cone11ag0862 458 MobiDBLite consensus disorder prediction 439 458 - -
Cone11ag0862 458 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872(InterPro)
Cone11ag0862 458 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872(InterPro)
Cone11ag0862 458 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872(InterPro)
Cone11ag0862 458 SUPERFAMILY CCCH zinc finger 344 372 IPR036855 GO:0046872(InterPro)
Cone11ag0862 458 MobiDBLite consensus disorder prediction 1 28 - -
Cone11ag0862 458 Gene3D - 294 378 - -
Cone11ag0862 458 Gene3D - 47 125 - -
Cone11ag0862 458 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0862 Cone-Chr11:7153370 Cone3ag0631 Cone-Chr3:3113517 4.99E-38 dispersed
Cone11ag0862 Cone-Chr11:7153370 Cone14ag0775 Cone-Chr14:4485559 6.29E-97 wgd
Cone11ag0862 Cone-Chr11:7153370 Cone15ag0782 Cone-Chr15:4743249 7.14E-108 wgd
Cone11ag0862 Cone-Chr11:7153370 Cone17ag0492 Cone-Chr17:2390133 2.01E-78 wgd
Cone11ag0862 Cone-Chr11:7153370 Cone18ag0696 Cone-Chr18:3717195 1.63E-226 wgd
Cone11ag0862 Cone-Chr11:7153370 Cone20ag0922 Cone-Chr20:6637882 1.50E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44347 PF12579 DUF3755 2.90E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0862 - - - 0.0