Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0886 ATGTCCATATTCCATTACCACTATCTTCATCTTCTTCTTCTTGCCCTGCTCCTAATTCTATCCCTTTACCCCTCCCCATCCCTCTCCCAAAACGACACCGCTCCATGCCCACTCAACTTCACCCTCCTCACCCAATTCGCCACAACCACCAACCGCCCAGACTTCGACGTCTCAAACGAGTGCCAGTACATCCTCCAGGGCCTCCGACTCGTCCAATCCCACTACCTCCAACTCACCAACTCGTTCGTTCCCCCATTCAACTCGTCCGAGTCATGCTGGTCCTCCTACCAATCCTATCTCAGCCAATCTCTCCCCAATTTCAACATCCTCACTTCCTGCGGCTTCCAATCCATCTGGATCTCGCTAGGATGCATGAACATTACCACTAGATCAGACTTCGAGAAAATCGTCCCTAAATCAGCGTTAAACGACGTCGTAGCCAGCTGCAATCAATCGCTGGAGAATAGCTCCCCTTGCGCTTCTTGCCTAACCAGCTTATCGAGCTTACAGGCTTCGTATCTGACCGGACCATCCGTAGGCAACGTCTCCGTTTGCACGGCGTACCCATCTATCTACGCTGCTGCGTTTTCTAATCGGTTTGGACCGTTGGATCAAGGGACTGCTCAATGCCTGTTTTCGCTGGGTTTCACTTCGATCAAATCGTCCACGAGCAAGAGGCGGAAGGTGGTGGTGGTTTTAGCTGTTTTGATCGGTTGTGCGGTCGGATTAGCGGTGGTGATCGGAAGTTGTTGGTTTTCACGGCGGAGATTGGAAAAGTCAAAGAAAATAAAAAACCGGAAAGAAATTTTCACCGTGAACTTATCATCCGGATTGTCGTCGATTAACGAGAACACTTCTTTGACGAGATTCTCCTTCGACGATATCAAACAAGCGACAAGGAATTTCTCAAGAGATCTCATAATCGGAACCGGTGGTTACGGAAATGTGTACAGAGGGACATTACAGGACGGTTCGGAAATCGCAGTGAAACGGTTTAAAAACTGTTCGCCGGCAGGTGACGTTAGTTTCGCCCACGAGGTAGAAGTCATAGCTAGCGTCAGACATGTAAATCTCGTGGCCTTAAGAGGTTACTGCATAACCGCCACTGCTAGGGACAGTAGTCATCAGAGAATGATAGTTTGTGATTTGATGAAAAACGGAAGCCTCTATGATCATTTATTTGGATCCCAAAAGAAGAAGAACAAGAAGTTAAGTTGGCCAATTAGGCAGAGAATCACGTTAGGGATGGCTAGAGGATTGGCGTATTTACATTCCGGGGCGGAGCCGGCGATAATTCATCGAGACATAAAGGCTAGTAATATACTTTTGGATGAGAAATTTGACGCGAGATTGGCCGATTTCGGGTTGGCGAAATTTAACAGGGAAGGGAGGACTCATATGAGCACGAGGGTAGCTGGGACTTTAGGGTATGTGGCTCCGGAATATGCGCTTTACGGGCAGTTGAGTGATAGGAGTGATGTGTACAGTTTTGGAGTTGTGCTTTTGGAGTTATTGAGCGGGAAGAAGGCGTTGAATTCGAATTTTGGAGGGAAGCAAGAGGAGGAGGAGCAGCCATGTTTGGTGACTGAATGGGCTTGGGAATTGGTGAGGGAGGGGAGATGTTTGGAGGTTGTTGAAGAAGGGATGGAGGGGGTAGGGGAGGTTGAGGTTATGGAGAGGTTTGTGTTGGTTGCTGTTCTGTGCTCTCATCCACAGTTGTATGCTAGGCCAACTATGGATCAGGTTTTGAAAATGCTTGAATCGGATTGTTCTGTGCCGTTGATTCCGGATCGGCCGGTTTCTCTTGTGGCTAAATATCGATGA 1824 48.36 MSIFHYHYLHLLLLALLLILSLYPSPSLSQNDTAPCPLNFTLLTQFATTTNRPDFDVSNECQYILQGLRLVQSHYLQLTNSFVPPFNSSESCWSSYQSYLSQSLPNFNILTSCGFQSIWISLGCMNITTRSDFEKIVPKSALNDVVASCNQSLENSSPCASCLTSLSSLQASYLTGPSVGNVSVCTAYPSIYAAAFSNRFGPLDQGTAQCLFSLGFTSIKSSTSKRRKVVVVLAVLIGCAVGLAVVIGSCWFSRRRLEKSKKIKNRKEIFTVNLSSGLSSINENTSLTRFSFDDIKQATRNFSRDLIIGTGGYGNVYRGTLQDGSEIAVKRFKNCSPAGDVSFAHEVEVIASVRHVNLVALRGYCITATARDSSHQRMIVCDLMKNGSLYDHLFGSQKKKNKKLSWPIRQRITLGMARGLAYLHSGAEPAIIHRDIKASNILLDEKFDARLADFGLAKFNREGRTHMSTRVAGTLGYVAPEYALYGQLSDRSDVYSFGVVLLELLSGKKALNSNFGGKQEEEEQPCLVTEWAWELVREGRCLEVVEEGMEGVGEVEVMERFVLVAVLCSHPQLYARPTMDQVLKMLESDCSVPLIPDRPVSLVAKYR 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7301570 7303393 + Conep11aG0091500.1 Cone11ag0886 448138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0886 607 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 384 594 - -
Cone11ag0886 607 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 263 382 - -
Cone11ag0886 607 Pfam Protein kinase domain 307 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0886 607 ProSiteProfiles Protein kinase domain profile. 302 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0886 607 PANTHER OS01G0750732 PROTEIN 44 590 IPR050885 -
Cone11ag0886 607 SUPERFAMILY Protein kinase-like (PK-like) 285 598 IPR011009 -
Cone11ag0886 607 Gene3D Transferase(Phosphotransferase) domain 1 384 592 - -
Cone11ag0886 607 SMART serkin_6 302 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0886 607 Pfam SPARK 31 185 IPR043891 -
Cone11ag0886 607 CDD STKc_IRAK 308 587 - -
Cone11ag0886 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0886 607 Gene3D Phosphorylase Kinase; domain 1 262 382 - -
Cone11ag0886 607 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0886 Cone-Chr11:7301570 Cone4ag1426 Cone-Chr4:11369690 3.79E-115 dispersed
Cone11ag0886 Cone-Chr11:7301570 Cone17ag0465 Cone-Chr17:2222402 2.16E-260 wgd
Cone11ag0886 Cone-Chr11:7301570 Cone20ag0888 Cone-Chr20:6476040 6.83E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81898 PF00814 TsaD 3.20E-91 CL0108 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0886 - - - 0.0