Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0939 ATGGTTAAAATCTCACAGATAAGTCAGAAGCAGAGTTGTATTACTGCTACTGAAATGATCAACAGCAAGATTGATGATAGAAACGATCAAGCGACGAAGGTGGTCGGGATTAAGAGAACGCGCAAGGGCCTACCGCGCGACGCCCCTGCGAAGCGAAGCTCTATCTTCCGCGGAGTCACAAGGCATCGGTGGACGGGAAGGTACGAGGCTCATTTGTGGGATAAGAATTGCTGGAACGAGTCGCTGAGCAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCGGCGGCACATGCTTATGATTTGGCTGCATTGAAGTACTGGGGGCATCAAACTCTCCTTAATTTCCCTTTATCCACATATGAAGAGGATCTTAAAGAAATGGATACCCAATCAAAGGAAGAATATATTGGATCATTGAGGAGAAAAAGCAGTGGTTTCTCTCGAGGTGTCTCAAAATATCGAGGCGTAGCCAGACACCATAGTAATGGTAGATGGGAAGCTCGCATTGGCAGAGTAATTGGCAGCAAATATCTCTACCTTGGCACATATGCAACCGAAGAAGAAGCAGCGACTGCATATGACATGGCAGCCATAGAGTACCGTGGAGCTAACGCCGTTACAAACTTTGACCTGGGTCGTTACGTCAAGATCATAAATCCTAACGACTGTAATGACGATTCTAGTAACGCTAAGAATCTTCAACTAATTTCCGTCAACGGCGACGACGTTTCTTCCTCGAAAATGGCAAACGGTAATATAGAGCAATGCTCAGGAGGTACTACACTAGGGATCATACTGCAATCATCAAAGTTGAAGGACATGTACATGGACAGAACATCAGCTGCCGTTGATCATGAGTACTGTCCAGTAGAGGAAGTAGGGGCACCACAGTCGGACCCACCTGTTAGAGGAAGTGTTTTTCCCGACGATATACAAACATTGTTTGATTGTGAGGACTATTCTACATCATCTGCCGCCAGCTGCTACATCGACGGTACTGATGACAGTATTTTTGGCGACTTAGATTCATTTTGCATCACCAATTTTTCAGTGTGA 1071 45.28 MVKISQISQKQSCITATEMINSKIDDRNDQATKVVGIKRTRKGLPRDAPAKRSSIFRGVTRHRWTGRYEAHLWDKNCWNESLSKKGRQVYLGAYDDEEAAAHAYDLAALKYWGHQTLLNFPLSTYEEDLKEMDTQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHSNGRWEARIGRVIGSKYLYLGTYATEEEAATAYDMAAIEYRGANAVTNFDLGRYVKIINPNDCNDDSSNAKNLQLISVNGDDVSSSKMANGNIEQCSGGTTLGIILQSSKLKDMYMDRTSAAVDHEYCPVEEVGAPQSDPPVRGSVFPDDIQTLFDCEDYSTSSAASCYIDGTDDSIFGDLDSFCITNFSV 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7668317 7671843 + Conep11aG0097100.1 Cone11ag0939 448191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0939 356 ProSiteProfiles AP2/ERF domain profile. 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 FunFam AP2-like ethylene-responsive transcription factor 156 217 - -
Cone11ag0939 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 237 - -
Cone11ag0939 356 SMART rav1_2 55 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 SMART rav1_2 157 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 Gene3D AP2/ERF domain 55 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 Gene3D AP2/ERF domain 156 216 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 FunFam AP2-like ethylene-responsive transcription factor 54 123 - -
Cone11ag0939 356 SUPERFAMILY DNA-binding domain 54 123 IPR016177 GO:0003677(InterPro)
Cone11ag0939 356 ProSiteProfiles AP2/ERF domain profile. 55 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 PRINTS Ethylene responsive element binding protein signature 197 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 CDD AP2 156 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 Pfam AP2 domain 56 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 Pfam AP2 domain 156 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0939 356 SUPERFAMILY DNA-binding domain 156 216 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0939 Cone-Chr11:7668317 Cone17ag0285 Cone-Chr17:1367243 1.21E-118 dispersed
Cone11ag0939 Cone-Chr11:7668317 Cone18ag0626 Cone-Chr18:3211989 7.41E-221 wgd
Cone11ag0939 Cone-Chr11:7668317 Cone20ag1123 Cone-Chr20:7687688 1.65E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44352 PF08170 POPLD 2.80E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0939 K09285 - rcu:8280276 386.726