Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0950 ATGGCTTATTCTTCATGGGTAGATACTTCATTAGATCTCAACCTCAATCCTCTCCGATACGTTAACGACGTCATTCCGCCAAAGGAGGTGGAAAGCAAATCTCTACATTTTGAGAGGAAAATTTCAGTGAAAGACGAGAGTTATGCGTTGGAGGAGGAATTGAAGAGGGTGAATGAGGAAAACAAGAGGCTGACGGAAATGCTAACGGTGATGTGCGAAAAGTACAACGCTTTGAGGAATCATTTGATGAACTACATGAACAAAAATCCTGAGCAGAAGGAGCTTATAGTAAGCTCAGCAAAGAAAAGAAAATCGGAAAGCAGCAATAATGATAGTATTAGTAATCATGTCGTAGGAATTATCAATAGTAATGGTAATTCGGAGAACAGCTCGACTGATCAGGAAGATACATGCAAGAAATTACAAAGAGAAGAAAGCATTAAAGCCAAAATCACTAGAGCTTACGTTCGGATCGAACCGTCCGATACTACCCTTGTGGTGAAAGATGGATATCAATGGAGGAAATATGGGCAGAAGGTGACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAGTGCTCTTTTGCTCCAAGCTGCCCTGTGAAAAGGAAGGTGCAAAAAAGTGTAGAAGATCAATGCGTTTTAGTTGCAACTTATGAAGGCGAACACAATCATCCACCTCCATCTCAGCTTGACCATCAAGCGAATACAAGCTCAACTAGGAGTAGTACCACGACACTTAGCGGCTCGATTAATCCCTTTTCGACCTCTGTAAACGGTGGATCATCGACACCATCAAATATAACTCTTGATTTGATAAAGTCAAAATCAAATCCGAGTGTCGAAAATACGCCTGAGGTGCATAAGTTTCTGGTAGAACAAATGGCTTCATCATTGACGAAAGATTCGAAGTTCACGGCGGCTTTGGCTGCTGCTATTTCCGGACGAATATTTACGCAATAA 963 41.23 MAYSSWVDTSLDLNLNPLRYVNDVIPPKEVESKSLHFERKISVKDESYALEEELKRVNEENKRLTEMLTVMCEKYNALRNHLMNYMNKNPEQKELIVSSAKKRKSESSNNDSISNHVVGIINSNGNSENSSTDQEDTCKKLQREESIKAKITRAYVRIEPSDTTLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKRKVQKSVEDQCVLVATYEGEHNHPPPSQLDHQANTSSTRSSTTTLSGSINPFSTSVNGGSSTPSNITLDLIKSKSNPSVENTPEVHKFLVEQMASSLTKDSKFTAALAAAISGRIFTQ 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7747844 7749235 - Conep11aG0098200.1 Cone11ag0950 448202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0950 320 MobiDBLite consensus disorder prediction 229 263 - -
Cone11ag0950 320 FunFam WRKY transcription factor 40 152 229 - -
Cone11ag0950 320 Coils Coil 47 74 - -
Cone11ag0950 320 Gene3D WRKY domain 151 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0950 320 Pfam WRKY DNA -binding domain 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0950 320 SMART WRKY_cls 167 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0950 320 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0950 320 SUPERFAMILY WRKY DNA-binding domain 163 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0950 320 MobiDBLite consensus disorder prediction 220 263 - -
Cone11ag0950 320 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 40 315 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0950 Cone-Chr11:7747844 Cone17ag0272 Cone-Chr17:1288799 8.86E-87 dispersed
Cone11ag0950 Cone-Chr11:7747844 Cone18ag0617 Cone-Chr18:3133849 1.10E-173 wgd
Cone11ag0950 Cone-Chr11:7747844 Cone20ag1141 Cone-Chr20:7768393 6.28E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44354 PF00400 WD40 2.30E-05 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0950 - - - 0.0