Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0985 ATGGTGAACTCAATGGAAATCTTCGAAGAAATGGGCTTTTATGGTAATCTCGAGTTTCTTCAAGCCACCCCTCTTGGGCAAAGAGAAGCGGCTCAAGAGCATGAATCAAAGGTGGTTATGGAGGATGAGGAGGGTTATAGTGATGAGGAATCAGTAGATCTTGAGGAGCTTGAGAGAAGAATGTGGAGAGACCGGACTCTCTATAGGCGGCTCAAAGAACGGAAAAAGGGAGGCCAAGAAGTAGGAGCGAGTGAAAGTGCAAAGAGGAAACATCAATCCCAAGATCAAGCCCAGAGGAAAAAGATGTCAAGGGCACAAGATGGTATTTTAAAATACATGCTCAAAATGATGGAGGTTTGTAATGCTCAAGGTTTTGTTTATGGAATCATCCCTGAGAAAGGAAAGCCGGTTAGTGGAGCCTCAGATAATCTCCGTGCATGGTGGAAGGAAAAGGTTCGATTTGACCGTAATGGGCCCGCTGCAATCTCCAAGTACGATCTAGACCACTGGATTTCAATTCCGGGAAAGACTTCTTCTGATGTAGAGGCATCAATTTCTCAAAACTTACAAGAGCTCCAAGACACTACTTTAGGATCGCTTCTTTCAGCTTTAATGCAGCATTGTGACCCGCCCCAGAGGCGGTTTCCATTGGAGAAGGGTGTTGCTCCACCGTGGTGGCCCACTGGAAACGAGGAATGGTGGTCTTCTCAAGTGGGTTTCTTACCGAACAATGATGGAGCAACTCCTCCTTATAAGAAGCCTCATGATCTAAAGAAGGCTTGGAAGGTTAGTGTTCTTACGGCTGTTATCAAACATATTTCCCCTGACACTGCCAAGATCAGAAAGCTTGTTCTTCAGTCAAAATGTCTTCAAGACAAAATGACTGCCAAAGAGAGTGCCACTTGGCTTGCTATCGTAAACCAGGAAGAAGCTTTGGCCCGTAAGTTATATCCCGATAAATTCTTACCTGAAATATCGCCTCTTGGGTCTGACTCTCTCATGATTGGTGACACTAGTGATTATGATGTTGAAGGTGTTAAAGAATGCAAGCCTTCTGGTAATAAAGATCTTTTCAATACAATGATGCCGTTAATGGGTCCCCAAATTAAAGGAGAGGTCTTAGAGAGTGATATATCGGATTTTGGCTTGAAGCGGAAGAAGGTGAGTGATGAAAGAGATCATATAATGGCGGGTCAAACTCAAAAAACATATTATACATGTGAGAATTCTCAGTGCCCTTATAACGATGTCCGTCTTGGGTTTCCGGACAGGAGTTCTAAAAACATCCACCAACTGAATTGTCCATTTCGGACTACTTCTGTCCAAAGTCTTGCAATATCAAATTTTAACATAACAAGTGACCAAGCTCCAAACCATAGTGTTAAGGGACTTGAGCTGATTCCGGAAGACGGGCAGAAAATGATATCCGATCTGATGACATTCTATGACAGTAATCTCCAAAGGAGCGAAAACTTTGATCAAGTGAATATTGATGTTACCGACGGTCTTAATCATCGGCAGCAAAACTTCCAACTTAATCGGATGGACGGGAAATTTTACGGGCAGGAAGGAATCACAGGAGGTGGCTCCTATACTAATTTTCCATCAATTCAGTTCGATCAATGTAACTCATACAACTTGGAAGACACCTCCTTCTGGTACCTTTGA 1668 43.23 MVNSMEIFEEMGFYGNLEFLQATPLGQREAAQEHESKVVMEDEEGYSDEESVDLEELERRMWRDRTLYRRLKERKKGGQEVGASESAKRKHQSQDQAQRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAISKYDLDHWISIPGKTSSDVEASISQNLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGNEEWWSSQVGFLPNNDGATPPYKKPHDLKKAWKVSVLTAVIKHISPDTAKIRKLVLQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKFLPEISPLGSDSLMIGDTSDYDVEGVKECKPSGNKDLFNTMMPLMGPQIKGEVLESDISDFGLKRKKVSDERDHIMAGQTQKTYYTCENSQCPYNDVRLGFPDRSSKNIHQLNCPFRTTSVQSLAISNFNITSDQAPNHSVKGLELIPEDGQKMISDLMTFYDSNLQRSENFDQVNIDVTDGLNHRQQNFQLNRMDGKFYGQEGITGGGSYTNFPSIQFDQCNSYNLEDTSFWYL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7920393 7923297 - Conep11aG0101700.1 Cone11ag0985 448237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0985 555 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 20 506 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag0985 555 Coils Coil 54 74 - -
Cone11ag0985 555 SUPERFAMILY DNA-binding domain of EIN3-like 188 313 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag0985 555 MobiDBLite consensus disorder prediction 74 102 - -
Cone11ag0985 555 FunFam Ethylene insensitive 3-like 1 180 320 - -
Cone11ag0985 555 Pfam Ethylene insensitive 3, DNA-binding domain 55 310 IPR047091 GO:0003700(InterPro)
Cone11ag0985 555 FunFam Ethylene insensitive 3-like 1 91 169 - -
Cone11ag0985 555 Gene3D - 178 321 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag0985 555 Gene3D - 91 172 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0985 K14514 - - vvi:100250496 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0985 Cone-Chr11:7920393 Cone5ag0446 Cone-Chr5:1893514 2.87E-198 dispersed
Cone11ag0985 Cone-Chr11:7920393 Cone18ag0594 Cone-Chr18:2981687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1551 . 1 623 EIL Transcription Factor Family AT2G27050 58.2 4.7e-190 661.8
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT2G27050 59.9 1.1e-189 660.6
Cone5ag0446 . 7 512 EIL Transcription Factor Family AT2G27050 59.2 4.9e-155 545.4
Cone1ag1457 . 7 505 EIL Transcription Factor Family AT2G27050 58.2 6.2e-150 528.5
Cone11ag0985 . 5 490 EIL Transcription Factor Family AT2G27050 55.1 1.5e-135 480.7
Cone18ag0594 . 5 490 EIL Transcription Factor Family AT2G27050 54.9 5.7e-135 478.8
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT2G27050 66.0 1.3e-91 334.7
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT2G27050 64.5 3.3e-90 330.1
Cone18ag0117 . 79 327 EIL Transcription Factor Family AT5G21120 50.4 6.1e-72 269.2
Cone11ag1473 . 79 327 EIL Transcription Factor Family AT5G21120 51.2 1.0e-71 268.5
Cone11ag1473 . 74 551 EIL Transcription Factor Family AT1G73730 56.0 1.0e-133 474.6
Cone18ag0117 . 78 559 EIL Transcription Factor Family AT1G73730 56.0 2.8e-131 466.5
Cone18ag0042 . 13 309 EIL Transcription Factor Family AT1G73730 64.2 1.3e-107 387.9
Cone11ag1551 . 37 333 EIL Transcription Factor Family AT1G73730 63.3 2.4e-106 383.6
Cone1ag1457 . 39 329 EIL Transcription Factor Family AT1G73730 62.8 7.1e-103 372.1
Cone5ag0446 . 41 332 EIL Transcription Factor Family AT1G73730 61.5 1.6e-102 370.9
Cone11ag0985 . 47 348 EIL Transcription Factor Family AT1G73730 60.5 1.2e-94 344.7
Cone18ag0594 . 47 315 EIL Transcription Factor Family AT1G73730 63.9 3.7e-91 333.2
Cone11ag1551 . 2 623 EIL Transcription Factor Family AT3G20770 60.1 2.5e-205 712.6
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT3G20770 61.8 1.4e-203 706.8
Cone5ag0446 . 6 512 EIL Transcription Factor Family AT3G20770 59.2 9.7e-157 551.2
Cone1ag1457 . 6 536 EIL Transcription Factor Family AT3G20770 55.7 1.2e-154 544.3
Cone11ag0985 . 7 520 EIL Transcription Factor Family AT3G20770 51.1 2.4e-131 466.8
Cone18ag0594 . 7 525 EIL Transcription Factor Family AT3G20770 51.5 1.2e-130 464.5
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT3G20770 67.3 5.2e-94 342.8
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT3G20770 66.8 2.9e-92 337.0
Cone18ag0117 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 5.5e-71 266.2
Cone11ag1473 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 7.2e-71 265.8
Cone5ag0446 . 33 297 EIL Transcription Factor Family AT5G10120 58.5 7.4e-85 312.0
Cone1ag1457 . 33 297 EIL Transcription Factor Family AT5G10120 57.8 1.6e-84 310.8
Cone11ag1551 . 31 297 EIL Transcription Factor Family AT5G10120 56.7 1.1e-83 308.1
Cone11ag1473 . 78 291 EIL Transcription Factor Family AT5G10120 59.8 1.9e-72 270.8
Cone18ag0117 . 78 289 EIL Transcription Factor Family AT5G10120 59.4 2.1e-71 267.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44357 PF00076 RRM_1 7.70E-12 CL0221 Cone TF