Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0988 ATGGGGATTCAAACAATGGGATCTCAAGGTGGGGGAGATAGTAACGGCAAACAATCGCAATTCCAGCCATTAGCCCGTCAAAGCTCAATGTATAGTCTCACTCTAGACGAGGTTCAAAACCAATTAGGTGACTTAGGAAAGCCGCTTAGCAGCATGAACCTAGACGAGCTTCTCAAAAACGTATGGATCGTCGAAGCAAACCAATCATCCGTCGGTATGGATGTCGAAGGCAATGGTGGTGGGACCCAATTGGCAAATCAGACAGTGACACTTCAGCACCAGGCGAGCATTTCATTAACCAGCGCGCTTAGTAAGAAAACAGTGGATGAGGTATGGAGAGATATCCAACAAAAAAAAGATGCAAATGACGGGGACAAGATGAAGAAGCCGGCAGGGGAGAGGCAATCCACTTTGGGGGAGATGACATTGGAGGACTTTTTGGTAAAAGCGGGCGTTGTGGCAGAAGCAGAAGGTTGTTCTGGTAAGAAAAGTAGTATGGAAGTAGTTGAGGGGGGAAATGTGGGGCCTCAATTTCTGGGACAGGCACAGCAGTGGGTGCAGTTCCCACAACAGAGTATGATGGGAGTTTATATTCCGGGCCAGCCTATGCATATGGATGGAGGTGGGATGGAAGTTGTGTACGGGGAGAATCCGGTAGGAGTGCCTTCTCCTTTGATGGGGACATTGTCAGATTCTCAGATGGTTGGAAGAAAGAGGGGAAACCCGGAGGAAATTATTGAGAAGACAGTGGAGAGGAGGCAGAAGAGGATGATTAAGAATCGGGAATCGGCTGCTCGATCACGAGCTAGGAAGCAGGCTTATACTACTGAGCTGGAGAACAAGGTTTCGAGATTGGAGGAGGAAAATGAGAGGCTTAGCAAGCAGAAGATGAACAAATTTTGGAGTCTTGGTAGATCGTGTCTATATTAA 930 47.63 MGIQTMGSQGGGDSNGKQSQFQPLARQSSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWIVEANQSSVGMDVEGNGGGTQLANQTVTLQHQASISLTSALSKKTVDEVWRDIQQKKDANDGDKMKKPAGERQSTLGEMTLEDFLVKAGVVAEAEGCSGKKSSMEVVEGGNVGPQFLGQAQQWVQFPQQSMMGVYIPGQPMHMDGGGMEVVYGENPVGVPSPLMGTLSDSQMVGRKRGNPEEIIEKTVERRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENERLSKQKMNKFWSLGRSCLY 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7935542 7939504 - Conep11aG0102000.1 Cone11ag0988 448240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0988 309 Gene3D - 250 301 - -
Cone11ag0988 309 SMART brlzneu 248 306 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0988 309 SUPERFAMILY Leucine zipper domain 252 295 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0988 309 Coils Coil 268 298 - -
Cone11ag0988 309 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0988 309 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 295 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0988 309 MobiDBLite consensus disorder prediction 1 23 - -
Cone11ag0988 309 CDD bZIP_plant_BZIP46 252 296 - -
Cone11ag0988 309 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 250 302 - -
Cone11ag0988 309 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 296 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cone11ag0988 309 Pfam bZIP transcription factor 252 295 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0988 Cone-Chr11:7935542 Cone1ag1459 Cone-Chr1:56983815 7.56E-115 dispersed
Cone7ag1568 Cone-Chr7:10759744 Cone11ag0988 Cone-Chr11:7935542 4.35E-14 transposed
Cone11ag0988 Cone-Chr11:7935542 Cone18ag0589 Cone-Chr18:2935282 5.97E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44358 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0988 K14432 - mdm:103438647 379.407