Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1001 ATGGTTCGCCCCCAACAGCGGTACCGTGGCGTCCGACAACGGCATTGGGGCTCTTGGGTGTCCGAAATCCGACACCCACTCCTAAAGACAAGAATATGGCTCGGCACGTTTGAAACGGCAGAAGACGCGGCGAGGGCGTACGATGAAGCAGCGAGACTTATGTGCTGTCCGAAAGAACGTACCAATTTCTCTTACACTTCGCCGCCGACAAGCAAGCTTCTGTCTGCTACTTTGACGGCCAAGTTACAGAAATGCCACTTGGCCTCACTCCAACTGACTAAGAAAAATGTTGTTAATAACATTAATGATCAGCAGCATCAGAAAACACAGACGTTTAAGCAAGCTATTAATAACTGTAATTATTCTATGAATAATTACCGAAATGCCGGGATGAGATCGTCGGACGACATTGTTAGTGGTGTTGTCGTGTGGCCGGAGAAGAAGATTCCGACCGGAGATATGATCATGAGGTGGCCGGAGAGTAATTACAATGAACATATTTTGCAGCCGCTAGAGGATGATAATATAGAGCAGATGATACAAGAGTTGCTTGATCTTGGGTCTTCTATCGAACTTAATTACTAA 585 46.15 MVRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCCPKERTNFSYTSPPTSKLLSATLTAKLQKCHLASLQLTKKNVVNNINDQQHQKTQTFKQAINNCNYSMNNYRNAGMRSSDDIVSGVVVWPEKKIPTGDMIMRWPESNYNEHILQPLEDDNIEQMIQELLDLGSSIELNY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7999408 8000089 - Conep11aG0103300.1 Cone11ag1001 448253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1001 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 104 IPR050913 -
Cone11ag1001 194 Pfam AP2 domain 7 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 CDD AP2 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cone11ag1001 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone11ag1001 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1001 194 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1001 Cone-Chr11:7999408 Cone18ag0578 Cone-Chr18:2866079 1.35E-119 dispersed
Cone11ag0997 Cone-Chr11:7978906 Cone11ag1001 Cone-Chr11:7999408 4.41E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44360 PF04187 Cofac_haem_bdg 3.80E-40 CL0572 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1001 - - - 0.0