Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1005 ATGGAGAATGAACAAGTCCCATCGTCTGCTCCTTCAATACCTGCAACTCCAGGAAATTTTGGTGGGTTCAACAATAAGAGATTATCCCTTCACAAGAGCTGCAATTGCCTCACTGTTGCTAATGAACAAGGAAGAGAGGAAGACAATTTAACTGATCAGCGGCTGCGTTCTTTGACACCTCCATTTGTCTCACTTGCAAAAATGGTGGGAGCAGAGTTCATAGGAACCTTTATACTCGTCTTTTCTGGGACGGCTACAGCTATTTTGAACGAAAAGACACGTGGCACTCAATCACTATTGGGCATAGCTTCCGCTGGTGGCCTAGCTGTTATGATCCTCGTTACATCTACGGCCCACATTTCAGGTGCCCATTTCAACCCGGCAGTAACCATAGCCATAACTGCATTGAAGCATTTTCCATGGAAACATGTGCCGATCTATATTGGAGCACAAATGGTGGCATCTTTATGTGCTTCATTTGCAGTACAGGGAATATTTAAGCCTATAATGAGTGGTGGAGTAACTGTTCCTTCAGGAGGATATGGTCAAGCTTTTGCAATTGAATTTATCATTAGCTTCAACCTCATGTTTGTTGTCACTGCCCTTGCCACTGATATTAAAGCTGTGGGAAGGCTTGCAGGGATAGCAGTGGGGGGCACTGTCATGCTCAATGTTCTCATCGCTGGTGAAATAACAGGAGCTTGTATGAATCCGGTGAGAGCCCTCGGACCAGCTATAGCCGCGAGTAATTTCAAAGGTATATGGATTTATCTTACAGCTCCTATCCTCGGAGCACTCAGTGGGGCCGGGGCCTATTCTGCTATTAAGTTCCCGGACAATGGAGTCTCTCAGAGAAAACCTGCGTGA 867 45.79 MENEQVPSSAPSIPATPGNFGGFNNKRLSLHKSCNCLTVANEQGREEDNLTDQRLRSLTPPFVSLAKMVGAEFIGTFILVFSGTATAILNEKTRGTQSLLGIASAGGLAVMILVTSTAHISGAHFNPAVTIAITALKHFPWKHVPIYIGAQMVASLCASFAVQGIFKPIMSGGVTVPSGGYGQAFAIEFIISFNLMFVVTALATDIKAVGRLAGIAVGGTVMLNVLIAGEITGACMNPVRALGPAIAASNFKGIWIYLTAPILGALSGAGAYSAIKFPDNGVSQRKPA 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8023306 8024783 + Conep11aG0103700.1 Cone11ag1005 448257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1005 288 PANTHER AQUAPORIN NIP2-1 55 279 IPR034294 -
Cone11ag1005 288 Pfam Major intrinsic protein 65 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 Gene3D Glycerol uptake facilitator protein. 28 285 IPR023271 -
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 106 130 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 67 86 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 PRINTS Major intrinsic protein family signature 143 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone11ag1005 288 SUPERFAMILY Aquaporin-like 64 280 IPR023271 -
Cone11ag1005 288 ProSitePatterns MIP family signature. 124 132 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1005 Cone-Chr11:8023306 Cone20ag1150 Cone-Chr20:7806133 1.60E-125 dispersed
Cone11ag1005 Cone-Chr11:8023306 Cone18ag0574 Cone-Chr18:2847073 3.04E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1005 K09874 - rcu:8259747 368.622