Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1037 ATGTTTCCTTCAGTCTGCATTCTACTTATTTGCCTCTTTACCACTCTCACTAGAGCTAGAGCTGCTTTTAACCTCTCTCTCCCTCATCAGCACCCTGACCCTGAATCTGTTGCTCAACAACTTCAAAGGAGGGTGAATGCATCTCTTTCCAGAAGACAACTCCTTCCCATCCAAACAAAGATTCAATCCTCTTGCCTGACCGGAAACCCAATCGACGACTGCTGGCGCTGCGACTCAAACTGGCAGAGCAACCGGCAGAGGCTCGCTGACTGCGGCATTGGCTTCGGCCAAGACGCCATGGGCGGAAAAGGTGGTCAGATCTATGTCGTGACCGATTCCTCCGACTCCGATCCGGTTAACCCCAAACCAGGCACCCTCCGGTTCGCCGTGATCCAAGACGAACCGCTCTGGATCACCTTCTCCGCCGACATGACGATCAAACTCAAGTACGAGCTCATGATCAACAGCTTCAAAACAATCGACGGTCGAGGAGCTAACGTCCACATTACTGGCGGTGGGTGCTTAACACTACAGTACGTCTCCAACGTAATAATCCACAACATCCACGTCTACCAGTGTAAACCAACGGGAAACACTAACATACGGTCGAGCCCAACGCACGTCGGTTACCGTGGAAAATCGGACGGCGACGGGATCTCCATCTTCAGCTCGCGGAAGATCTGGATCGATCATTGCTCCCTGTCTGATTGTACGGACGGATTGATCGATGCCATAATGGGGTCCACTGGTATAACTATCTCTAACAACTACTTCGCGCACCACGATGAGGTTATGCTGTTGGGGCACGATGATAAGTATACACCCGATGACGGCATGCAGGTAACGATAGCGTTTAATCACTTCGGCCAGGGGCTGGTGCAGCGTATGCCTCGGTGTAGACGCGGGTACATACACGTGGTGAACAATGATTTCACCGCATGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCTACCATAAACAGTCAGGGGAATCGTTACACCGCTCCAACTGACCTCAATGCTAAGGAGGTGACGAAGCGCGTGGACACGAACGCAGGGGATTGGACGGACTGGAATTGGAGATCGGTAGGGGATGTGATGGTGAATGGAGCGTTCTTCGTGCCGTCAGGAGCTGGGCTGGGCAGTCAATATAGCAAGGCCGTCAGTGTGGAGCCCAAATCCGCTGGTCTCATTAACCATCTCACCATGAACGCCGGTGCTTTTGGTGGGCCCAGGGACGATAGTGGTGGTGGGACTACTTCATATCCAGGTGGCACTGTGAACAACGGAAATCTCGGAACTGGCAGTAACGGCGGCAGCGGTGGCGACGGTGATTATTTTGGAATGATATTTGGTGGCGGCGGTTTCAGTGGTGCTCCGCCTCAATTATGCTTATCATTTATTAATTTTGTCTTAACGTTGACTCTGATTGTTATCTCCATTTGGTACACGAGCATCAGCCATGATGGTGCTCTGTTATAG 1485 51.92 MFPSVCILLICLFTTLTRARAAFNLSLPHQHPDPESVAQQLQRRVNASLSRRQLLPIQTKIQSSCLTGNPIDDCWRCDSNWQSNRQRLADCGIGFGQDAMGGKGGQIYVVTDSSDSDPVNPKPGTLRFAVIQDEPLWITFSADMTIKLKYELMINSFKTIDGRGANVHITGGGCLTLQYVSNVIIHNIHVYQCKPTGNTNIRSSPTHVGYRGKSDGDGISIFSSRKIWIDHCSLSDCTDGLIDAIMGSTGITISNNYFAHHDEVMLLGHDDKYTPDDGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPTDLNAKEVTKRVDTNAGDWTDWNWRSVGDVMVNGAFFVPSGAGLGSQYSKAVSVEPKSAGLINHLTMNAGAFGGPRDDSGGGTTSYPGGTVNNGNLGTGSNGGSGGDGDYFGMIFGGGGFSGAPPQLCLSFINFVLTLTLIVISIWYTSISHDGALL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8205776 8209181 + Conep11aG0106900.1 Cone11ag1037 448289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1037 494 SUPERFAMILY Pectin lyase-like 63 391 IPR011050 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Cone11ag1037 494 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Cone11ag1037 494 FunFam Pectate lyase 68 410 - -
Cone11ag1037 494 MobiDBLite consensus disorder prediction 413 436 - -
Cone11ag1037 494 MobiDBLite consensus disorder prediction 420 436 - -
Cone11ag1037 494 Gene3D - 68 410 IPR012334 -
Cone11ag1037 494 PANTHER PECTATE LYASE 18-RELATED 17 409 IPR045032 GO:0030570(InterPro)
Cone11ag1037 494 SMART amb_all 143 340 IPR002022 -
Cone11ag1037 494 Pfam Pectate lyase 150 332 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1037 Cone-Chr11:8205776 Cone15ag0231 Cone-Chr15:1079114 2.00E-189 dispersed
Cone1ag1378 Cone-Chr1:56664382 Cone11ag1037 Cone-Chr11:8205776 1.00E-246 wgd
Cone10ag0217 Cone-Chr10:1059074 Cone11ag1037 Cone-Chr11:8205776 5.24E-218 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone18ag0538 Cone-Chr18:2654646 2.39e-310 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone3ag0244 Cone-Chr3:1304395 6.61E-217 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone5ag0370 Cone-Chr5:1575229 1.05E-248 wgd
Cone11ag1037 Cone-Chr11:8205776 Cone5ag1260 Cone-Chr5:6004920 1.17E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1037 K01728 - vvi:100246124 712.99