Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1059 ATGATAAGAGTAATGGATTCCGTAAAAGAATCAGAGAAATCCTTAGATTCGCAACTATGGCATGCTTTTGCTGGTGGGATGGTTCAAATCCCACCTCTTAACTCAACAGTCTTCTACTTCCCTCAAGGATATTCCGAATACCTCCCCGAAAAACTCCAATTCAATACCTCCCATGTCCCTTCACTCATCCTTTGCAAAGTATCTGCCATCCGGTACATGGCGGATCCTGAAACCGATGAGGTTTTCGCAAAGATAAGGCTAATCCCTTTGCGAAATGATGGAATTTCCCTTTTCGAAGAGGATGAAGAAGAAGGAAAACTCAACGGAAGCAACGGCAGGGAAAAACCCCTCTCGTTTGTCAAGACATTGACCCAATCGGACGCGAATAATGGGGGAGGATTCTCCGTGCCCCGTTATTGCGCAGAGATTATCTTACCCCGCTTGGACTACTCGTCCAAGCTGCCCGTCCAAACCATTTTCGTGAAAGATGTTCACGGGGAGGTGTGGAAGTTTAGGCATATATATAGAGGGACCCCACGTCGCCACCTATTAACGACCGGTTGGAGTAATTTCGTTAACCAGAAGAAGCTAGTGGCGGGGGATTCGGTTGTGTTTTTCCGTGCGGAGAATGGGGATCTTTCGCTTGGGATCAGGCGGGCCAAGAGGGGGATAGGGGGCAGGTCCTCAGGGTGGAACAGTAATAATAGTCAATTCGGGTGTTGTTCGAATTTGGATCATTCGGTTGGTGGGAGAGTGAGTGTTGAGTTAGTTATGGAAGCGGGGGAGCTTGCGGTTAGTCGACAGCCATTTGAGGTTGTTTATTATCCGTGCGCTAGCACGCCGGAGTTTTGCGTGAGGGCTTCTGAGGTGAGAGCGGCAATGCATATAAGATGGTGTTCTGGGATGAGGTTTAAGATGCCCTTTGAAACAGAAGATCCGTCGAGGATGAGTTGGTTTGCTGGAACTATATCTTCCGTTCAGGCTGTGGATCCTGTCAATTCGCCTGATTCTCCATGGCGACTTCTACAGGTAACTTGGGATGAACCGGATTTGCTACAAAATGTGAAGCGGGTTAACCCCTGGGCAATTGAAGTGGCATCAAACATGCCGACCCTCCATCACCTCTCACCTTTCTTGCGGCCAAGAAAGAAGATGCAGGGCCCATACACCTCGGACCTGACCCTGTTCGGCCAACTTCCGATACCCTCGTTTTGCACCAGCCCTGCCGAATTCCTCAATTCCACAGGCCCCCCACGATTTCCCGACAATATATTTCCGGGAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACTCTCTCCTCCGTCTTCATATAGTATCCCTTTTGTTGATTTTCAGCTCCTTGAAAAATCTGGACCTGTTCCTACAATCCCGAGTGGAAACTTCACGGGAATATCTAAGAATCATGAGAGCAAAGAATCTTCTTGGCTGACCATGGGAGATTCTTCGAATCGATGTTCAAAGGATAACAATGAGAAGAAAACAGGCAAAATTTTATTGTTCGGTCAAGTTATTCAACCCAATCAGCCGACGATTAATTCCAAGAGGTCTTCTTTGATTGATACAAATGGAAACGGTTCATCCATTGAGAATCAAGAGAAGGCCCAAAACCTGTCTGATGGGTCACAATCAGATAGAGGATCACTTTCCTTAGAGGAGACAAATGAAAAATTATTGACCGACATGTTCGGGGTAGGAAGCTCACAGATGCCAATCTCAGTTCTTTAA 1749 47.23 MIRVMDSVKESEKSLDSQLWHAFAGGMVQIPPLNSTVFYFPQGYSEYLPEKLQFNTSHVPSLILCKVSAIRYMADPETDEVFAKIRLIPLRNDGISLFEEDEEEGKLNGSNGREKPLSFVKTLTQSDANNGGGFSVPRYCAEIILPRLDYSSKLPVQTIFVKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSVVFFRAENGDLSLGIRRAKRGIGGRSSGWNSNNSQFGCCSNLDHSVGGRVSVELVMEAGELAVSRQPFEVVYYPCASTPEFCVRASEVRAAMHIRWCSGMRFKMPFETEDPSRMSWFAGTISSVQAVDPVNSPDSPWRLLQVTWDEPDLLQNVKRVNPWAIEVASNMPTLHHLSPFLRPRKKMQGPYTSDLTLFGQLPIPSFCTSPAEFLNSTGPPRFPDNIFPGSIQGARHAQFGLSPPSSYSIPFVDFQLLEKSGPVPTIPSGNFTGISKNHESKESSWLTMGDSSNRCSKDNNEKKTGKILLFGQVIQPNQPTINSKRSSLIDTNGNGSSIENQEKAQNLSDGSQSDRGSLSLEETNEKLLTDMFGVGSSQMPISVL 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8336690 8339352 + Conep11aG0109200.1 Cone11ag1059 448311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1059 582 Pfam Auxin response factor 262 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone11ag1059 582 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677(InterPro)
Cone11ag1059 582 Gene3D - 297 370 - -
Cone11ag1059 582 MobiDBLite consensus disorder prediction 466 498 - -
Cone11ag1059 582 SUPERFAMILY DNA-binding pseudobarrel domain 115 221 IPR015300 -
Cone11ag1059 582 SMART B3_2 119 221 IPR003340 GO:0003677(InterPro)
Cone11ag1059 582 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 538 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone11ag1059 582 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677(InterPro)
Cone11ag1059 582 CDD B3_DNA 118 219 IPR003340 GO:0003677(InterPro)
Cone11ag1059 582 MobiDBLite consensus disorder prediction 516 555 - -
Cone11ag1059 582 Gene3D - 117 221 IPR015300 -
Cone11ag1059 582 FunFam Auxin response factor 117 221 - -
Cone11ag1059 582 MobiDBLite consensus disorder prediction 466 492 - -
Cone11ag1059 582 FunFam Auxin response factor 298 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1059 Cone-Chr11:8336690 Cone13ag1264 Cone-Chr13:9569338 7.18E-181 dispersed
Cone1ag0736 Cone-Chr1:6827721 Cone11ag1059 Cone-Chr11:8336690 6.25E-170 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone11ag1059 Cone-Chr11:8336690 1.04E-167 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone18ag0519 Cone-Chr18:2547457 0 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone19ag1251 Cone-Chr19:8592477 4.36E-179 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone3ag0278 Cone-Chr3:1451499 6.32E-173 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone5ag1237 Cone-Chr5:5735524 9.62E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44363 PF16746 BAR_3 5.70E-39 CL0145 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1059 K14486 - rcu:8278088 594.734