Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1078 ATGTCTTTTCCCAATTTCCCTACCCCTGTTTCTCAATCATCTTCTACTCCTAGTCTTTCTCCACAACCACCATCTTCTCCTCCTCTAGCCATTGTCCTCGGCCCATGTGCCGCCTGTAGGATCCTTCGCCGCCGGTGCACCGAGAAATGTGTCTTAGCTCCATATTTCCCCCCCAGTGAGCCGGCGAAGTTCATCATTGCCCATCAAGTTTTTGGAGCTAGTAACATCATCAAGTTATTGCAGGAAATTCCAGAGGATCAAAAAGCAGATGCAGTTAGTAGTATAGTGTATGAGGCGAAGGCACGGATCCGAGACCCGGTCTATGGTTGTGCCGGTGCGATCTGCCATTTGCAAAAGCAAGTTAGCGAGTTACAAGCACAAGTGGCCAAGGTACAAGGTGAGCTTGTGAACATGGAAGTCCAACAAACCAATTCGGTGGCTTTGATTTGTATGGAAATGAGACAATCTCAACACACACCCAACTTCCAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGAGGACTGGGACATGGATTGTTTATTGGATGACAACAATTTGGGAACTTCATGGGTACCTCTTTGGACATGA 642 45.79 MSFPNFPTPVSQSSSTPSLSPQPPSSPPLAIVLGPCAACRILRRRCTEKCVLAPYFPPSEPAKFIIAHQVFGASNIIKLLQEIPEDQKADAVSSIVYEAKARIRDPVYGCAGAICHLQKQVSELQAQVAKVQGELVNMEVQQTNSVALICMEMRQSQHTPNFQPQQQQQQQQQQQQQQQQQQQQQQQQQQEDWDMDCLLDDNNLGTSWVPLWT 213
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8438866 8439736 - Conep11aG0111300.1 Cone11ag1078 448330
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1078 213 MobiDBLite consensus disorder prediction 1 26 - -
Cone11ag1078 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 187 - -
Cone11ag1078 213 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cone11ag1078 213 Coils Coil 121 141 - -
Cone11ag1078 213 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cone11ag1078 213 Coils Coil 165 192 - -
Cone11ag1078 213 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1078 Cone-Chr11:8438866 Cone8ag1587 Cone-Chr8:11808670 6.53E-43 dispersed
Cone1ag1339 Cone-Chr1:56487374 Cone11ag1078 Cone-Chr11:8438866 4.79E-61 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone11ag1283 Cone-Chr11:9521027 5.30E-63 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone18ag0297 Cone-Chr18:1448190 1.31E-63 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone18ag0498 Cone-Chr18:2433576 3.98E-77 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone5ag0326 Cone-Chr5:1378722 1.29E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44365 PF11107 FANCF 6.80E-12 No_clan Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1078 - - - 0.0