Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone11ag1078 | ATGTCTTTTCCCAATTTCCCTACCCCTGTTTCTCAATCATCTTCTACTCCTAGTCTTTCTCCACAACCACCATCTTCTCCTCCTCTAGCCATTGTCCTCGGCCCATGTGCCGCCTGTAGGATCCTTCGCCGCCGGTGCACCGAGAAATGTGTCTTAGCTCCATATTTCCCCCCCAGTGAGCCGGCGAAGTTCATCATTGCCCATCAAGTTTTTGGAGCTAGTAACATCATCAAGTTATTGCAGGAAATTCCAGAGGATCAAAAAGCAGATGCAGTTAGTAGTATAGTGTATGAGGCGAAGGCACGGATCCGAGACCCGGTCTATGGTTGTGCCGGTGCGATCTGCCATTTGCAAAAGCAAGTTAGCGAGTTACAAGCACAAGTGGCCAAGGTACAAGGTGAGCTTGTGAACATGGAAGTCCAACAAACCAATTCGGTGGCTTTGATTTGTATGGAAATGAGACAATCTCAACACACACCCAACTTCCAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGAGGACTGGGACATGGATTGTTTATTGGATGACAACAATTTGGGAACTTCATGGGTACCTCTTTGGACATGA | 642 | 45.79 | MSFPNFPTPVSQSSSTPSLSPQPPSSPPLAIVLGPCAACRILRRRCTEKCVLAPYFPPSEPAKFIIAHQVFGASNIIKLLQEIPEDQKADAVSSIVYEAKARIRDPVYGCAGAICHLQKQVSELQAQVAKVQGELVNMEVQQTNSVALICMEMRQSQHTPNFQPQQQQQQQQQQQQQQQQQQQQQQQQQQEDWDMDCLLDDNNLGTSWVPLWT | 213 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8438866 | 8439736 | - | Conep11aG0111300.1 | Cone11ag1078 | 448330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone11ag1078 | 213 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Cone11ag1078 | 213 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 34 | 187 | - | - | |
| Cone11ag1078 | 213 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 132 | IPR004883 | - | |
| Cone11ag1078 | 213 | Coils | Coil | 121 | 141 | - | - | |
| Cone11ag1078 | 213 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
| Cone11ag1078 | 213 | Coils | Coil | 165 | 192 | - | - | |
| Cone11ag1078 | 213 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1078 | Cone-Chr11:8438866 | Cone8ag1587 | Cone-Chr8:11808670 | 6.53E-43 | dispersed | |
| Cone1ag1339 | Cone-Chr1:56487374 | Cone11ag1078 | Cone-Chr11:8438866 | 4.79E-61 | wgd | |
| Cone11ag1078 | Cone-Chr11:8438866 | Cone11ag1283 | Cone-Chr11:9521027 | 5.30E-63 | wgd | |
| Cone11ag1078 | Cone-Chr11:8438866 | Cone18ag0297 | Cone-Chr18:1448190 | 1.31E-63 | wgd | |
| Cone11ag1078 | Cone-Chr11:8438866 | Cone18ag0498 | Cone-Chr18:2433576 | 3.98E-77 | wgd | |
| Cone11ag1078 | Cone-Chr11:8438866 | Cone5ag0326 | Cone-Chr5:1378722 | 1.29E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44365 | PF11107 | FANCF | 6.80E-12 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone11ag1078 | - | - | - | 0.0 |