Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1091 ATGATGGGTAAAGTTCATTTGAACAATAAAAGTCCCTTAACCAGGGGACTAGCTGAATTGAATTGCCATATGCAAGACGAGGATAGAGATATAAGAGGTGGAATTACAGGTGAGGGTCAGGAGCTCTCTCAGGAAGATGAGTCACAAATCAATGAGGATGCAAATAATAGACGGAGGATAGAATCTGTGCTGGCCCCAGTCTGTATCGATGGTGGTATACAGAGGTTACATCAACATCCAGTAGATTCTTTGGTTCGCTGGGAGAGGTTTCTGCCTTGTAAGTCATTGAAGGTTCTCTTGGTAGAAAATGACGATTCAACTCGACGCGTCATGAGTGCTTTACTACGGAATTGCGGCTATGAAGTTTCAGCTGTGGAAAATGGTATGCAAGCCTGGAAGATGTTAGAAAATCTAACATCTCAAGTACATCTTGTTTTGACTGAGGTAGTCATGCCTTGTTTATCAGGCATTGGTCTTTTATCCAAAATTATGGGCCACAAAACTTGCAAGAACATTCCCGTAATTATGATGTCATCTCATGATTCTGTGAGTATAGTCTTTCAGTGTCTGTCAAAGGGAGCAGTTGACTTCTTAGTGAAGCCTATTCGAAGGAATGAGCTTAAAAACATTTGGCAGCATATTTGGAGGAAATGTCAAACCAAGTTTTCTATATTCATTTTTAAGTTAACATTTCTTCAGTCAAGTGGTAGTGGAAGTGGAAATGAAAGTGGTATACATGCTCGAAAACACTCAAAGTCAAGAAGCAATGAAGAGTCGGACAACAACATTGGGAATAATGATGATGATGATATAGGAAGCATTGATTTGAATATTAGGGACGGAAGTGACCATGGAAGTGACACTCAGAGTTCATGGATGAAGAGTGCTATAGAAATTAATAGCCCCCAAATGATATTGTCACAGGACAAGTTAATTGATCCTCCTGATAGCATTTCTGCCCTGGTTATTCAGCCAAGACCTGAGGCATATGGCAGCAACTGGGTGCCTAAGACTTCTAAGAGGGAGTGCAAAAGGCAAGATGATGGACTTGGCAAAGACTTGGAGTTGGGAATATCTAGGACTCCAAACTTGCAGCTACCAGAACTAAGCAAACACAAGGTTTCTGAAATGAAGGAAACCAAAAATGATAAGCAAATGAAAAATGGACAACTTCAGTTACCTGAGAAACTAAAGGGAAAAGAGAAGGATCAAGTTATAGATCTAACGAGCGTAACTGAACCTCTTATAGAAAGTGCGGTCTTTGACTTCTCAAATAGTCTCTGCAAGAATTCTAGCAACAAAGATGATCTTTCCTATGACAACAAGGAATTACCTTCCATCGAGTTAAGTTTGAAGAGGTTGAGAGATACTGGAGACATTGGGAGCAACGGCCACCAGCGAAATGTTCTGCGACATTCTGACATTTCAGCCTTCTCAAGGTATGATTCTGCGGCTAATCAAGCTTCAATAGGGAATGTTGGCAGCTGTTCACCTCTTGATGATAGCTCAGAGGCAGAAAAGATAGAATCAAAGCAAAACTCACAGTCTAATTCCAATAGCACCCCTCCAAATCAGAGTTCCGATGGTAGTAGTAAAAACATGGACATAGGCTCCACTATCAATAATATTTCCACTAAACCATTGCCAAATAATGACAATTCAGATCCCAAGGCTACTATCAATTGCCTGCAACCTTTCTCTGCCTTCCAATCTGTGCAAAATGGTTCTACACCATTTTGCAAGCCTATGGAAGAAGGGAAGGCTGATACTGATACAGATACAGATACAGGATTAGTGAATAAAGATAGAGCACAGGGAGGAGGGACTAATCAGCCAGTCCAGGTCCAGCACCACCATCACCATCACCACTATTACCATCACCATGTGCATAACATACCTCAAAAGCTCGAGCTATCTGACTGTGATGATCTGTCTACAGAGAAATTGGCTGCAGCTGCTCCAGGGTCATCTAATATATTGGGTACACCCAAAAAAGGCCATGCTTGTAATCATGGCATAACAGGGATCATGAAAGAAAGTAACCATGAGAGTGATGGACAGCATGGAAGCAGCAATTCCTCAAATCCTAATGGGTCAAATATTGAAAGTGGGCTAACTGGAAAATGGTTAGGTAGTGGTGGAGTAGGATTTGGAAACAAAAGTGTAGTTGATCAAGACCGATTTGCACAGAGAGAGGCTGCCTTGAACAAATTCCGTGAGAAGAGAAAAGGGAGGTGTTTTGAGAAGAAGGTCCGTTATCAGAGTAGGAAGAAACTCGCTGAACAGAGATCGCGTGTGAGAGGACAATTTGTTCGGCAGGTGGTGTTGCATGAAGGAAAAGGCAAAGATGTGCATTCCTAA 2361 41.68 MMGKVHLNNKSPLTRGLAELNCHMQDEDRDIRGGITGEGQELSQEDESQINEDANNRRRIESVLAPVCIDGGIQRLHQHPVDSLVRWERFLPCKSLKVLLVENDDSTRRVMSALLRNCGYEVSAVENGMQAWKMLENLTSQVHLVLTEVVMPCLSGIGLLSKIMGHKTCKNIPVIMMSSHDSVSIVFQCLSKGAVDFLVKPIRRNELKNIWQHIWRKCQTKFSIFIFKLTFLQSSGSGSGNESGIHARKHSKSRSNEESDNNIGNNDDDDIGSIDLNIRDGSDHGSDTQSSWMKSAIEINSPQMILSQDKLIDPPDSISALVIQPRPEAYGSNWVPKTSKRECKRQDDGLGKDLELGISRTPNLQLPELSKHKVSEMKETKNDKQMKNGQLQLPEKLKGKEKDQVIDLTSVTEPLIESAVFDFSNSLCKNSSNKDDLSYDNKELPSIELSLKRLRDTGDIGSNGHQRNVLRHSDISAFSRYDSAANQASIGNVGSCSPLDDSSEAEKIESKQNSQSNSNSTPPNQSSDGSSKNMDIGSTINNISTKPLPNNDNSDPKATINCLQPFSAFQSVQNGSTPFCKPMEEGKADTDTDTDTGLVNKDRAQGGGTNQPVQVQHHHHHHHYYHHHVHNIPQKLELSDCDDLSTEKLAAAAPGSSNILGTPKKGHACNHGITGIMKESNHESDGQHGSSNSSNPNGSNIESGLTGKWLGSGGVGFGNKSVVDQDRFAQREAALNKFREKRKGRCFEKKVRYQSRKKLAEQRSRVRGQFVRQVVLHEGKGKDVHS 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8511929 8516444 + Conep11aG0112600.1 Cone11ag1091 448343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1091 786 ProSiteProfiles Response regulatory domain profile. 97 215 IPR001789 GO:0000160(InterPro)
Cone11ag1091 786 Gene3D - 95 228 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 492 559 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 235 290 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 509 559 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 686 705 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 582 627 - -
Cone11ag1091 786 MobiDBLite consensus disorder prediction 677 705 - -
Cone11ag1091 786 SMART REC_2 96 211 IPR001789 GO:0000160(InterPro)
Cone11ag1091 786 PANTHER TWO-COMPONENT RESPONSE REGULATOR 88 456 IPR045279 GO:0009736(InterPro)
Cone11ag1091 786 SUPERFAMILY CheY-like 94 220 IPR011006 -
Cone11ag1091 786 Pfam Response regulator receiver domain 98 209 IPR001789 GO:0000160(InterPro)
Cone11ag1091 786 ProSiteProfiles CCT domain profile. 731 773 IPR010402 GO:0005515(InterPro)
Cone11ag1091 786 MobiDBLite consensus disorder prediction 584 598 - -
Cone11ag1091 786 Pfam CCT motif 731 773 IPR010402 GO:0005515(InterPro)
Cone11ag1091 786 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1091 Cone-Chr11:8511929 Cone1ag1021 Cone-Chr1:55118294 2.34E-47 dispersed
Cone10ag0269 Cone-Chr10:1282359 Cone11ag1091 Cone-Chr11:8511929 1.51E-45 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone11ag1274 Cone-Chr11:9470078 5.85E-125 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone13ag1299 Cone-Chr13:9702566 1.28E-17 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone18ag0310 Cone-Chr18:1521944 1.27E-135 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone18ag0487 Cone-Chr18:2366305 4.59E-52 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone19ag1288 Cone-Chr19:8731478 5.33E-78 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone3ag0296 Cone-Chr3:1530099 2.61E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44367 PF13771 zf-HC5HC2H 1.60E-10 CL0390 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1091 K12129 - cit:102630875 723.776