Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone11ag1100 | ATGGCATTGCTACCTTACGCCGACGTCGATTCGAATTTACGAGCTCTCGCCGGTCAGGCCGAGGGTTTCGGAAGATTCGCCATTGGAGGTCTTCATGGAGCGATCTATTTCGTCACCTCTTTGGCAGATGATGGTCCTGGATCTCTTCGTGAAGGATGCCGCCGGAAAGAACCACTTTGGATTGTGTTTGAAATTTCCGGCACAATTGATCTCTCGTCCTACTTAAATGTGTCATCTTACAAGACAATAGATGGTAGGGGTCAAAGAATAAAGCTCAAAGGGAAAGGCTTAAGATTGAAGGAGTGTGAACATGTAATTATATGCAACCTTGAGTTTGAGGGTGGAAGAGGCCATGACGTTGATGGGATTCAAATAAAACCGAATTCTAAGCACATTTGGATTGACCGTTGTAACCTTCGTGATTATGATGACGGGCTTATTGATATCACCCGACAAAGTACGGATATAACCATATCTAGATGTTACTTTGCACAACATGATAAGACAATGCTTATTGGAGCGGACCCATCTCATGTAGGTGATAGATGCATTCGTGTGACAATTCACCATTGTTTCTTTGACGGGACCCGGCAAAGACACCCTCGTGTTCGATTTGGGAAAGTTCATCTGTATAACAATTACTCAAGAAACTGGGGTATATACGCAATCTGTGCCAGTGTGGAGTCCCAGATATATTCCCAGTGCAATATTTATGAAGCCGGACAGAAGAAAAAGACTTTCGAATTTTACACAGAGAAGGCAGCAGACAAAGGTGAAGAGAAGTCTGGCCTAATAAGATCTGAGGGTGACTTACTTTTAAATGGAGCTCAGTCATGTCCATTAAAAGAAGCTGTTGGAGAGTGCATATTTCATCCAACTGAATTCTACCCGACATGGACTATGGAAGCTGCCTCAGATTCACTTAAATGCGTTCTACAAGTTTGTACGGGCTGGCAATCGATCCACAGACCCGTAGAACAATTTTCAACTACATAG | 996 | 43.37 | MALLPYADVDSNLRALAGQAEGFGRFAIGGLHGAIYFVTSLADDGPGSLREGCRRKEPLWIVFEISGTIDLSSYLNVSSYKTIDGRGQRIKLKGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCNLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYSRNWGIYAICASVESQIYSQCNIYEAGQKKKTFEFYTEKAADKGEEKSGLIRSEGDLLLNGAQSCPLKEAVGECIFHPTEFYPTWTMEAASDSLKCVLQVCTGWQSIHRPVEQFSTT | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8571623 | 8573625 | + | Conep11aG0113500.1 | Cone11ag1100 | 448352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone11ag1100 | 331 | SMART | amb_all | 31 | 244 | IPR002022 | - | |
| Cone11ag1100 | 331 | Pfam | Pectate lyase | 75 | 237 | IPR002022 | - | |
| Cone11ag1100 | 331 | Gene3D | - | 5 | 309 | IPR012334 | - | |
| Cone11ag1100 | 331 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 306 | IPR045032 | GO:0030570(InterPro) | |
| Cone11ag1100 | 331 | SUPERFAMILY | Pectin lyase-like | 17 | 280 | IPR011050 | - | |
| Cone11ag1100 | 331 | PRINTS | Pollen allergen Amb family signature | 221 | 240 | IPR018082 | - | |
| Cone11ag1100 | 331 | PRINTS | Pollen allergen Amb family signature | 199 | 218 | IPR018082 | - | |
| Cone11ag1100 | 331 | PRINTS | Pollen allergen Amb family signature | 19 | 36 | IPR018082 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1100 | Cone-Chr11:8571623 | Cone8ag0841 | Cone-Chr8:8427211 | 4.51E-33 | dispersed | |
| Cone11ag1100 | Cone-Chr11:8571623 | Cone18ag0478 | Cone-Chr18:2312634 | 7.43E-195 | wgd | |
| Cone11ag1100 | Cone-Chr11:8571623 | Cone3ag0312 | Cone-Chr3:1590028 | 2.73E-194 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone11ag1100 | K01728 | - | cit:102617115 | 587.415 |